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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttccccaccatagtcagaaccaacaaaaattaatttcaaattgatctctctgaattgtgtgatatccacaaaattttgggattttgcaagggaaggttgtatctaatgccattattttccctgtattcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAG

Basic information

species Vitis vinifera
transcript Vv01s0011g00550.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g00550.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM5G898684_T08 (Zea mays), 3'ss of exon 7
gtgagtgttccccaccatagtcagaaccaacaaaaattaatttcaaattgatctctctgaattgtgtgatatccacaaaattttgggattttgcaagggaaggttgtatctaatgccattattttccctgtattcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAG
                                        ||| |||   | |      |  | | | |  | |       | || |  ||    |    | |||     |  || ||| |||  ||    ||| |     || | ||||| || ||||| |||  |||||||||||||||||| || ||  ||||||||||||| |||||||||||||| |     || ||| |||||
--------------------------------------tttttgaaaggaagcggcaaaagctattttagtttcctgttcctctgtgtcttgagcatatgaagttaggcattttgacatgattcccctaaaatttc-----agATTGGCCGTCTGCATTGCCTACTTCCCTGGTGGGAGGATGCTACAGTAGATTTTATGATTAGAGGGGGTTATAATGTCATAAACCAAATAAAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351051568|gb|FQ450120.1|FQ450120
EST:     TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAA                         GTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
genomic: TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAAgtgagtgttc ... tcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
EST: gi|351014788|gb|FQ437988.1|FQ437988
EST:     TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAA                         GTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
genomic: TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAAgtgagtgttc ... tcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
EST: gi|110361486|gb|EC924960.1|EC924960
EST:     TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAA                         GTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
genomic: TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAAgtgagtgttc ... tcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
EST: gi|110361507|gb|EC924986.1|EC924986
EST:     TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAA                         GTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
genomic: TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAAgtgagtgttc ... tcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
EST: gi|352786080|gb|FQ481875.1|FQ481875
EST:     TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAA                         GTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
genomic: TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAAgtgagtgttc ... tcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
EST: gi|349829486|gb|FQ420018.1|FQ420018
EST:     TTTGGCTTTTCA-GAGTATATCATTCACTAGAAGCTCAGACTGGACAAAA                         GTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
genomic: TTTGGCTTT-CAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAAgtgagtgttc ... tcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
EST: gi|349830592|gb|FQ416890.1|FQ416890
EST:     TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAA                         GTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT
genomic: TTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAAgtgagtgttc ... tcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcaagggaaggttgtatctaatgccattattttccctgtattcctatatagGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAG
                   atctaat  putative branch site (score: 3)
                                 ttttccctgtattcct  putative PPT
                             attatttt  TA-rich tract