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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagcagcgtttcgtttaagaatgtagaactagattgtcatttttaatatcacagcatgaaagttttatcattcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttgtagtatgtttattactttctaataattctctcttgcaaatgcagGCTGCAAAATCTGAGAAGAATTCTA

Basic information

species Vitis vinifera
transcript Vv01s0010g03700.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349808005|gb|FQ402396.1|FQ402396
EST:     GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCTCAG                         GCTGCAAAATCTGAGAAGAATTCTA
genomic: GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcag ... gcaaatgcagGCTGCAAAATCTGAGAAGAATTCTA
EST: gi|349815268|gb|FQ400423.1|FQ400423
EST:     GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCTCAG                         GCTGCAAAATCTGAGAAGAATTCTA
genomic: GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcag ... gcaaatgcagGCTGCAAAATCTGAGAAGAATTCTA
EST: gi|110381005|gb|EC946312.1|EC946312
EST:     GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAG                         GCTGCAAAATCTGAGAAGAATTCTA
genomic: GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcag ... gcaaatgcagGCTGCAAAATCTGAGAAGAATTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaatctttgtagtatgtttattactttctaataattctctcttgcaaatgcagGCTGCAAAATCTGAGAAGAATTCTA
                           ttctaat  putative branch site (score: 2)
                                    ttctctcttgc  putative PPT
           tagtatgtttattact  TA-rich tract