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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaattagttcattttcttcaatttatatatatgatgaccattttcttcttttcatcaagttgagcatttctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACTTCTTTATGTACCTTTGCCTAGTCCGGATGAGCGTGGGTTGATCCTAAAA

Basic information

species Vitis vinifera
transcript Vv01s0010g02600.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02600.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G19920.1 (Glycine max), 3'ss of exon 7
gtgcaattagttcat--tttcttcaatttatatatatgatgaccattttctt-cttttcatcaagttgagcatttctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACTTCTTTATGTACCTTTGCCTAGTCCGGATGAGCGTGGGTTGATCCTAAAA
|| || || |||||   | | ||   | ||  ||  |  | | | |    |  |  |  ||  |  | ||  | ||  ||  ||| |||||||||||||| ||||| ||  ||||||| || |||||||| |||||||||||||| ||  | || || || ||||| || |  |||||  | |||
gtacattttgttcaccatatgttttctctaattagttatttaacttcacatcacactgtattcaagtcagtttctcattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCAGATGAACGAGTTTTGATATTGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32249424|gb|CD715243.1|CD715243
EST:     AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAG                         ACCTGAGGTGATGGACCGTGCTGTGTTACGGCCTGGTAGGCTTGGGAAACT
genomic: AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGgtgcaattag ... ctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACT
EST: gi|30327377|gb|CD010639.1|CD010639
EST:     AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACGAATAG                         ACCTGAGGTGATGGACCGTGCTGTGTTACGGCCTGGTAGGCTTGGGAAACT
genomic: AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGgtgcaattag ... ctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACT
EST: gi|32271592|gb|CD720751.1|CD720751
EST:     AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAG                         ACCTGAGGTGATGGACCGTGCTGTGTTACGGCCTGGTAGGCTTGGGAAACT
genomic: AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGgtgcaattag ... ctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACT
EST: gi|30328045|gb|CD011307.1|CD011307
EST:     AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCGGGAATAG                         ACCTGAGGTGATGGACCGTGCTGTGTTACGGCCTGGTAGGCTTGGGAAACT
genomic: AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGgtgcaattag ... ctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACT
EST: gi|30327866|gb|CD011128.1|CD011128
EST:     AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAG                         ACCTGAGGTGATGGACCGTGCTGTGTTACGGCCTGGTAGGCTTGGGAAACT
genomic: AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGgtgcaattag ... ctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACT
EST: gi|32248801|gb|CD714620.1|CD714620
EST:     AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAG                         ACCTGAGGTGATGGACCGTGCTGTGTTACGGCCTGGTAGGCTTGGGAAACT
genomic: AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGgtgcaattag ... ctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACT
EST: gi|30324225|gb|CD007487.1|CD007487
EST:     AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAG                         ACCTGAGGTGATGGACCGTGCTGTGTTACGGCCTGGTAGGCTTGGGAAACT
genomic: AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGgtgcaattag ... ctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACT
EST: gi|30326365|gb|CD009627.1|CD009627
EST:     AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAG                         ACCTGAGGTGATGGACCGTGCTGTGTTACGGCCTGGTAGGCTTGGGAAACT
genomic: AGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGgtgcaattag ... ctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatatgatgaccattttcttcttttcatcaagttgagcatttctattggcagACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACTTCTTTATGTACCTTTGCCTAGTCCGGATGAGCGTGGGTTGATCCTAAAA
                                          tttctatt  CT-rich tract
                                         atttctatt  TA-rich tract