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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatcattcacccagtactctttatcttatattaataaacttattttcttcatgattgtttctattaaggaaatccttatgatggttctcttggtttatccaaccaaatagatccttttaacattccaatgggaatgtatgggactgcatttgcttattccatctactttttgctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAAAGCATCAAGCCCATGTAAAATTTTGTAAAACAGTTGCAGGAATTGGTGA

Basic information

species Vitis vinifera
transcript Vv01s0010g00580.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399958|gb|EC966491.1|EC966491
EST:     CTGACCGCGAAATATGAAGTAATTTCAGCATCTCCTAGAACATTGCTTTT                         AAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTAGAGGAA
genomic: CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatca ... gctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
EST: gi|110361414|gb|EC924882.1|EC924882
EST:     CTGACCGCGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTT                         AAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
genomic: CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatca ... gctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
EST: gi|349830142|gb|FQ420402.1|FQ420402
EST:     CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTT                         AAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
genomic: CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatca ... gctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
EST: gi|110363854|gb|EC927477.1|EC927477
EST:     CTGACCGCGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTT                         AAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
genomic: CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatca ... gctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgggaatgtatgggactgcatttgcttattccatctactttttgctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAAAGCATCAAGCCCATGTAAAATTTTGTAAAACAGTTGCAGGAATTGGTGA
                              ttccatctactttttg  CT-rich tract
                                     tacttttt  TA-rich tract