Sequence
atgc intronic sequence ATGC exonic sequence...ggatttccaaatttaagctcacttgctaaaggacttgatttttgttattcattttttaccctcatccttaggctgaagtgttatctctgtctttctgcagGTGGGTACTTTTAGAGACTCTTGACAAGGTGTCTCCAGGGATTGTTCATTGGAAGATTGCAACTAAGCCTCCCATTAAAATGCCATTCAGAAAAGTAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s1365g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G09360.1 (Glycine max), 3'ss of exon 9
----ggatttccaaatttaagctcacttgc-taaaggacttgatttttgttattcattttttaccctcatccttaggctgaagtgttatctctgtctttctgcagGTGGGTACTTTTAGAGACTCTTGACAAGGTGTCTCCAGGGATTGTTCATTGGAAGATTGCAACTAAGCCTCCCATTAAAATGCCATTCAGAAAAGTAGAA
| | | | | | | || ||| | | ||||| || | | |||| || | || | || || | ||| | | | ||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||| ||||| |||||||| |||||||| ||
aaccgagtcaaatgacattgtgttattaatgtagcagacctcacagttgttttttaatctttattatc--cattgagttgtgatgatg---ctggttctttacagGTGGGTTCTTCTAGAGACTCTTGACAAGGTGTCGCCAGGGATTGTCAATTGGAAGATTGCTAATAAGCCTCCGATTAAGATGCCATTTAGAAAAGTGGAG
upper sequence: Vv00s1365g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G22450.1 (Glycine max), 3'ss of exon 10
---ggatttccaaattta---agctcacttg--ctaaaggacttgatttttgttattcattttttaccctcatccttaggctgaagtgttatctctgtctttctgcagGTGGGTACTTTTAGAGACTCTTGACAAGGTGTCTCCAGGGATTGTTCATTGGAAGATTGCAACTAAGCCTCCCATTAAAATGCCATTCAGAAAAGTAGAA
|| | || |||| || || ||| || | |||||| | |||| | ||| | || | || || | | || | | | ||||||||| ||| | |||||||||||||||||||| ||||||||||| ||||||||||||| | || ||||| ||||| ||||||||||||||||||||
atgatgttgtgtgctctatgtagctgacctgacctagtgggataaggctttgttgtc---ttttgattctc--cattgagttgtgatgatgt---tgcttctttacagGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGGAAGATTGCTAACAAACCTCCAATTAAGATGCCATTCAGAAAAGTAGAG
upper sequence: Vv00s1365g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G45800.1 (Glycine max), 3'ss of exon 9
-----ggatttccaaatttaagctcacttgctaaaggacttgatttttgttattcattttttaccctcatccttaggctgaagtgttatctctgtctttctgcagGTGGGTACTTTTAGAGACTCTTGACAAGGTGTCTCCAGGGATTGTTCATTGGAAGATTGCAACTAAGCCTCCCATTAAAATGCCATTCAGAAAAGTAGAA
| || | | | | | | || | || | ||| || | | ||| | | ||| || || ||| | | ||| | ||||||||||||||| |||||| | |||||||| || ||||| |||||| ||||||||||||| | ||||| || ||||| ||||||| | |||||||||
tttaggaatggcgtgacatgatttttgatttgaagatagtttacttt-attttccttttgagatttttatcttttaagtggggtgat----ttacttttttacagGTGGGTACTTTTGGAGACTTTGGACAAGGTTTCACCAGGAATTGTTAATTGGAAGATTGCTAACAAGCCACCTATTAAGTTGCCATTTAAAAAAGTAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161709660|gb|FC058431.1|FC058431EST: CTTGGAAATTCAACATATATCAACAACGTTTTTGAAGATGTGAGAAATGG GTGGGTACTTTTAGAGACTCTTGACAAGGTGTCTCCAGGG
genomic: CTTGGAAATTCAACATATATCAACAACGTTTTTGAAGATGTGAGAAATGGgtgagtgcag ... ctttctgcagGTGGGTACTTTTAGAGACTCTTGACAAGGTGTCTCCAGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcattttttaccctcatccttaggctgaagtgttatctctgtctttctgcagGTGGGTACTTTTAGAGACTCTTGACAAGGTGTCTCCAGGGATTGTTCATTGGAAGATTGCAACTAAGCCTCCCATTAAAATGCCATTCAGAAAAGTAGAA
ttatctctgtctttct CT-rich tract
atttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggatttccaaatttaagctcacttgctaaaggacttgatttttgttattcattttttaccctcatccttaggctgaagtgttatctctgtctttctgcagGTGGGTACTTTTAGAGACTCTTGACAAGGTGTCTCCAGGGATTGTTCATTGGAAGATTGCAACTAAGCCTCCCATTAAAATGCCATTCAGAAAAGTAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - ccaaatt
- - - - - - - - - -cacttgc
- - - - - - - - - - - - - taaagga