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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaccaaaaattgtatttgcatatggtactgttacaagatatcagagtgagcaacatgggggtttttattttgtctaattggtttgagaaaatatgatttcataatccttgttatgtttcagTTTTGACCGTCATGCTCTGGACTTGGTAGATAGAATGCTCACTCTTGATCCATCCAAG

Basic information

species Vitis vinifera
transcript Vv00s0805g00020.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87584731|gb|DY473781.1|DY473781
EST:     TTCAAACCAGCAAAGCCCTTAGAGAGACGTGTCAGGGAGGTTTTCAGGAC                         TTTTGACCGTCATGCTCTGGACTTGGTAGATAGAATGCTCACTCTTGATCC
genomic: TTCAAACCAGCAAAGCCCTTAGAGAGACGTGTCAGGGAGGTTTTCAGGACgtaagtaacc ... tatgtttcagTTTTGACCGTCATGCTCTGGACTTGGTAGATAGAATGCTCACTCTTGATCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtctaattggtttgagaaaatatgatttcataatccttgttatgtttcagTTTTGACCGTCATGCTCTGGACTTGGTAGATAGAATGCTCACTCTTGATCCATCCAAG
     gtctaat  putative branch site (score: 3)
                                      tccttgtt  putative PPT
                     aaaatatgatttcata  TA-rich tract