Sequence
atgc intronic sequence ATGC exonic sequence...tagggatgtgctctggcaggtctttttgtttgtttcatatttggttgctatgcaagcacatcattctaaacccttgtacaataccaacttgttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G34940.1 (Glycine max), 3'ss of exon 6
tagggatgtgctctggcaggtctttttgtttgtttcatatttggttgctatgcaagcacatcattctaaacc-----cttgta----caataccaacttgttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
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--------tcatcattcatggcaattaagctcttgcttaagtctttatacatcaatcaagttattctgaactagatgctaacattatcattgaaaactcattt-tgtagCTTGCTAACATCATGGGTCGTTCTCAGTGGCTAACGTGTCCAAGGAAG
upper sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 6
tagggatgtgctctggcaggtctttttgtttgtttcatatttggttgctatgcaagcacatcattctaaacc-----cttgta----caataccaacttgttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
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--------tcatcattcatggcaattaagttcttgcttaagtctttatacatcaatcaagttattctgaactaaatactaacattatcattgaaaactcattt-tgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
upper sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G22340.3 (Arabidopsis thaliana), 3'ss of exon 5
tagggatgtgctctggcaggtctttttgtttgtttcatatttggttgctatgcaagcacatcattctaaacccttgtacaataccaacttgttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
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---------------gtaagcttgttttatgggctaataagtatatgttttttga-cgagtagt----aattgattaataat-cttgcttgtttttgtagCTTGCAAATATAATGGGTCGTTTCCTGTGGCTGACATGTCCCAGAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctatgcaagcacatcattctaaacccttgtacaataccaacttgttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
ttctaaa putative branch site (score: 2)
cttgttc putative PPT
attctaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagggatgtgctctggcaggtctttttgtttgtttcatatttggttgctatgcaagcacatcattctaaacccttgtacaataccaacttgttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -ggatgtg
- - - - - - - ggcaggt
- - - - - - - - - - - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataccaa