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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcttatgaaagttttggatgtgtcactgtttctttatcgttgtttttgttattatatatcattgttgatgttgttattttgcaattcccttacattaatttactagacttatgtttctgcagATATTTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTT

Basic information

species Vitis vinifera
transcript Vv00s0559g00010.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0559g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtcttatgaaagttttggatgtgtcactgtttctttatcgtt---gtttttgttatta----tatatcattgttgatgttgttattttgcaattcccttacattaatttactagacttatgtttctgcagATATTTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTT
||  || |  |  | ||||      ||||| |  |  |  |||||    || | |   || |    ||   |||   | |  || |||  |    |||   | | |  |||| |||||| |||  |   ||||| | |||||||| || |  |||||  | |     || |||||||||||| ||||||||||  | |  ||||| ||| ||||||||||||| ||||||| ||
gtatgtttccttta-gtttacctcttgtcagtaatcttggatcgtaagagtatatagaatgaaggttagggcatatcttagcttcttagctgatcattat-tcataaaaattcactagatttacatcaatgcagGTTTTTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgttattttgcaattcccttacattaatttactagacttatgtttctgcagATATTTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTT
                         cattaat  putative branch site (score: 3)
                                            tgtttct  putative PPT
                      ttacattaatttacta  TA-rich tract