1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ccagtaattaccttacctgtcaagaaacaaattcatgttctgggttctcaatgccatccattttccttgctttctaagatatcaatttccatcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTTCAGTTACTGCAGGGAATGCTTCTAGCATAAG
species | Vitis vinifera |
transcript | Vv00s0531g00050.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTEST: gi|77584049|gb|DV221063.1|DV221063
genomic: GTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTEST: gi|30301768|gb|CB978562.1|CB978562
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: AGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTEST: gi|77586184|gb|DV222186.1|DV222186
genomic: AGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTEST: gi|37190107|gb|CF609456.1|CF609456
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCGAGAAACAAGGATGGGGGTEST: gi|110358833|gb|EC923335.1|EC923335
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTEST: gi|71877133|gb|DT026188.1|DT026188
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCEST: gi|30298600|gb|CB975394.1|CB975394
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGC
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTEST: gi|110376548|gb|EC941608.1|EC941608
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTEST: gi|110378421|gb|EC943552.1|EC943552
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTEST: gi|110395476|gb|EC961142.1|EC961142
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTEST: gi|110361851|gb|EC925352.1|EC925352
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
EST: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG TTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
genomic: GGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAGgtaaatagaa ... atcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGT
tctcaatgccatccattttccttgctttctaagatatcaatttccatcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTTCAGTTACTGCAGGGAATGCTTCTAGCATAAG
tttccatctt CT-rich tract
taagatatcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccagtaattaccttacctgtcaagaaacaaattcatgttctgggttctcaatgccatccattttccttgctttctaagatatcaatttccatcttgacagTTTGATGCTGCAAAACTAAGGAAACTTCGACCAAGTTTCAAGGATGGGGGTTCAGTTACTGCAGGGAATGCTTCTAGCATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - -cctgtca
- - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - ctcaatg