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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctttctactttttcacttttagcatttcttgtattcctgttatttttatttttacaaaatttgtttttaagtacatgtacattcctcttgggggctctgagagaaagcttctgaatatatgggtctatagttatttcattcttacaaaatttgtttttagGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTG

Basic information

species Vitis vinifera
transcript Vv00s0507g00020.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G042981_T01 (Zea mays), 3'ss of exon 13
gttagctttctactttttcacttttagcatttcttgtattcctgttatttttatttttacaaaatttgtttttaaGTACATGTACATTCCTCTTGGGGGCTCTGAGAGAAAGCTTCTGAATATATGGGTCTATA-GTTATTTCATTCTTACAA--AATTTGTTTTTAGGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTG
                                                          ||| ||  ||       | ||||||  || |   |  |   |    | ||  |   |    ||||| |    | |  |||  |   ||    |||  | | |  ||  |||||| | |||||||||||||| || ||||| ||||| || |||| ||| ||||| |||||||| ||||| ||  | ||||| ||  |||| ||
----------------------------------------------------------acataaagtg-------gaacatgtctatac---taagctacatctatagctaatatacagatataggttattctgtgttgctatgtttgatcaaccactcttgttacagGTACTTATACATTCCTCTTGGTGGTTCTCAAAGAAAACTACTGAGTATCTGGGTGATATTCACGTTTGTAGCAGTGTGGCATGATCTAGAATG

upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 14
gttagctttctactttttcacttttagcatttcttgtattcctgttatttttatttttacaaaatttgtttttaaGTACATGTACATTCCTCTTGGGGGCTCTGAGAGAAAGCTTCTGAATATATGGGTCTATAGTTATTTCATTCTTACAAAATTTGTTTTTAGGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTG
                                                                           || ||  || |||| | ||   || | ||         | |   ||| ||   |  | | ||   |   ||    ||||||       ||||| || ||||||||||||||||| ||| ||| |||||| || ||| | |||||| | |||||||||||||| || ||||| || ||||||||
---------------------------------------------------------------------------gtgca-ataaattctttttcctggatttgtctttgttttcccagata-ataacttaaaatttggatgggtc----aaaattc------agGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG

upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 13
gttagctttctactttttcacttttagcatttcttgtattcctgttatttttatttttacaaaatttgtttttaaGTACATGTACATTCCTCTTGGGGGCTCTGAGAGAAAGCTTCTGAATATATGGGTCTATAGTTATTTCATTCTTACAAAATTTGTTTTTAGGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTG
                                                                           || ||  ||  ||| | ||   || | |        | ||    | |||  |   || |   ||||   | |  |||||||       ||||| || ||||||||||||||||| ||| ||| |||||| || ||| | |||||| | |||||||||||||| || ||||| || ||||||||
---------------------------------------------------------------------------gtgca-ataagttctttttcctggatttttctctttgttttcccagataatgacttaaa---attttgatgtgtcaaaattc------agGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttctgaatatatgggtctatagttatttcattcttacaaaatttgtttttagGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTG
                                 ttcttac  putative branch site (score: 2)
                                            tttgttttt  putative PPT
                    tatagttatttcattc  TA-rich tract