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...cagagtcctggtcgtcacccagttcttcatgtcgcatagcatgcaaccagcaatgacgaatggatcaatattaatacaacttttcctttgtattttgcagGTGTTAGGTGGTATATATGGTGGAAATATCTCTGGCATCACAGCGCAACACCTCGAATGG
species | Vitis vinifera |
transcript | Vv00s0333g00020.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG GTGTTAGGTGGTATATATGGTGGAAATATCTCTGGCATCACAGCGCAACACEST: gi|51051659|gb|CO819167.1|CO819167
genomic: GAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtacactcat ... tattttgcagGTGTTAGGTGGTATATATGGTGGAAATATCTCTGGCATCACAGCGCAACAC
EST: GAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG GTGTTAGGTGGTATATATGGTGGAAATATTTCTGGCATCACAGCGCAACACEST: gi|33405487|gb|CF211114.1|CF211114
genomic: GAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtacactcat ... tattttgcagGTGTTAGGTGGTATATATGGTGGAAATATCTCTGGCATCACAGCGCAACAC
EST: GAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG GTGTTAGGTGGTATATATGGTGGAAATATCTCTGGCATCACAGCGCAACAC
genomic: GAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtacactcat ... tattttgcagGTGTTAGGTGGTATATATGGTGGAAATATCTCTGGCATCACAGCGCAACAC
accagcaatgacgaatggatcaatattaatacaacttttcctttgtattttgcagGTGTTAGGTGGTATATATGGTGGAAATATCTCTGGCATCACAGCGCAACACCTCGAATGG
tattaat putative branch site (score: 2)
cttttcctttgtattt putative PPT
atcaatattaatacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagagtcctggtcgtcacccagttcttcatgtcgcatagcatgcaaccagcaatgacgaatggatcaatattaatacaacttttcctttgtattttgcagGTGTTAGGTGGTATATATGGTGGAAATATCTCTGGCATCACAGCGCAACACCTCGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - tcaccca
- - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - catagca
- - - - - - - - - - - - - - - - - - - - - gcaacca
- - - - - - - - - - - - - - - - - - - - - - - - -gcaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacaa