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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttccaaccttaactatcaaatatctttgaatgaagaatgtgccatatatagaagtttttctcggatttgaatcttgcattttattttcctgtactgcagTACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTTACGCAGACAATGCAGCATAGAGTTCACTTAGACCAGAGTATTGAACTGA

Basic information

species Vitis vinifera
transcript Vv00s0323g00100.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110392631|gb|EC958189.1|EC958189
EST:     TGGATGTAATTAACCAGAGAGACGCCGATCTTCTCTTCTTGTGGCAAAGG                         TACAAAAGATCAAAAGCTGGTTCGGAAAAGAAAGAAATTCTCAAGCAGCTT
genomic: TGGATGTAATTAACCAGAGAGACGCCGATCTTCTCTTCTTGTGGCAAAGGgtgagttcca ... tgtactgcagTACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTT
EST: gi|110365499|gb|EC928589.1|EC928589
EST:     TGGATGTAATTAACCAGAGAGACGCCGATCTTCTCTTCTTGTGGCAAAGG                         TACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTT
genomic: TGGATGTAATTAACCAGAGAGACGCCGATCTTCTCTTCTTGTGGCAAAGGgtgagttcca ... tgtactgcagTACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTT
EST: gi|110421397|gb|EC987693.1|EC987693
EST:     GAGACGCCGATCTTCTCTTCTTGTGGCAAAGG                         TACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTT
genomic: GAGACGCCGATCTTCTCTTCTTGTGGCAAAGGgtgagttcca ... tgtactgcagTACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTT
EST: gi|110415242|gb|EC981126.1|EC981126
EST:     TGGATGTAATTAACCAGAGAGACGCCGATCTTCTCTTCTTGTGGCAAAGG                         TACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTT
genomic: TGGATGTAATTAACCAGAGAGACGCCGATCTTCTCTTCTTGTGGCAAAGGgtgagttcca ... tgtactgcagTACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTT
EST: gi|28967305|gb|CB346338.1|CB346338
EST:     TGGATGTAATTAACCAGAGAGACGCCGATCTTCTCTTCTTGTGGCAAAGG                         TACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTT
genomic: TGGATGTAATTAACCAGAGAGACGCCGATCTTCTCTTCTTGTGGCAAAGGgtgagttcca ... tgtactgcagTACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatagaagtttttctcggatttgaatcttgcattttattttcctgtactgcagTACAAAAGATCAAAAGCTGATTCGGAAAAGAAAGAAATTCTCAAGCAGCTTACGCAGACAATGCAGCATAGAGTTCACTTAGACCAGAGTATTGAACTGA
                                cattttattttcct  CT-rich tract
                             ttgcattttatttt  TA-rich tract