Sequence
atgc intronic sequence ATGC exonic sequencegtttgttttcctccaaaattacaagcatctgttggatgattacaaaactgcaatgacattatgtgcctcatgttttgcagGCATTTGCTCGTCTGAGTGCTGTTTATGGTGGTACCTACATGCTCAACAAGCCAGAATGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0313g00050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 3'ss of exon 7
gtttgttttcctccaaaattacaagcatctgttggatgattacaaaactgcaatgacattatgtgcctcatgttttg-cagGCATTTGCTCGTCTGAGTGCTGTTTATGGTGGTACCTACATGCTCAACAAGCCAGAATGCAAG
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gtatgctcagttc--aaataatctggattctccacacagcttcagcttcattccagc-tgaaactctgcatattgtaatagGCCTTTGCTCGTTTGAGTGCTGTTTATGGTGGCACATACATGCTAAACAAAGCAGAATGCAAG
upper sequence: Vv00s0313g00050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G084440_T01 (Zea mays), 3'ss of exon 7
-------------------------------------------------------------------------------------------------gtttgttttcctccaaaattacaagcatctgttggatgattacaaaactgcaatgacattatgtgcctcatgtt-ttgcagGCATTTGCTCGTCTGAGTGCTGTTTATGGTGGTACCTACATGCTCAACAAGCCAGAATGCAAG
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gtaataatttaataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataatactttttaggcttcgttattgtaaactgaaacgtcgatacgatgatgctttcttttatttgtcatgaaatcaaagGCCTTTGCCCGCCTGAGCGCTGTTTACGGTGGCACGTACATGCTGAACAAGCCAGAATGCAAG
upper sequence: Vv00s0313g00050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G09550.1 (Arabidopsis thaliana), 3'ss of exon 6
gtttgttttcctccaaaattacaagcatctgttggatgattacaaaactg--caatgacattatgtgcctcatgttttgcagGCATTTGCTCGTCTGAGTGCTGTTTATGGTGGTACCTACATGCTCAACAAGCCAGAATGCAAG
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gttcgtgttcactctattct-catgtttcttctt-atttttacgactttttcctctgtctcaaacctctgtttctgtttcagGCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catctgttggatgattacaaaactgcaatgacattatgtgcctcatgttttgcagGCATTTGCTCGTCTGAGTGCTGTTTATGGTGGTACCTACATGCTCAACAAGCCAGAATGCAAG
attacaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttttcctccaaaattacaagcatctgttggatgattacaaaactgcaatgacattatgtgcctcatgttttgcagGCATTTGCTCGTCTGAGTGCTGTTTATGGTGGTACCTACATGCTCAACAAGCCAGAATGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG