Sequence
atgc intronic sequence ATGC exonic sequencegtcagtatctgcttgtgtctttggatttgctttatatttttgtatgcagatttgatggctaacacagtacaacttgatcttatattttttccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os05g42330.1 (Oryza sativa), 3'ss of exon 6
gtcagtatctgcttgtgtctttggatttgctttatatttttgtatgcagatttgatggcta-acacagtacaacttgatcttatattttttccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAG
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-gtaaagctaaagtgtacccaaccgtctacattgtatg---aaatgtgccatgaatgttgacactcaaaactaataggtgttctgtgctttga----cagGTGTTATTATCTGGTTGCTTGCTATTATCTACTTCATATCTGGTGTACCTGGTGCTTATGTGTTATGGTACCGCCCTCTTTATAATGCAATGAG
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G25460.1 (Glycine max), 3'ss of exon 6
-----gtcagtatctgcttgtgtctttggatttgctttatatttttgtatgcagatttgatggct---aacacagtacaacttgatcttatattttttccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAG
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gtgagtttagatacagagtattttcttaggtt-attttacagctcaaattacaaatctgacatttccaaattccatgcatttggaacttg-gccttgtttgttgcagGTGTAAAAATATGGTTTCTTGCCATTATCTACTTCATAGCAGGGGTCCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G31830.1 (Glycine max), 3'ss of exon 8
gtcagt----atctg---cttgtgtctttggatttgctttatatttttgtatgcagat-ttgatggctaacacagtacaacttgatcttatattttttccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAG
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gtcagtttagatatgaagcaagaattttctgggttattaaatggctcaaaatccaaatattgtcaacaaattaaatgcatatggaacttgtccttgttttg---tagGAGTGAAAATATGGTTTCTTGCTATTATCTACTTCATAGCAGGAATTCCTGGAGCATATGTCTTGTGGTATCGCCCATTATATCGTGCTTTTAG
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G31090.1 (Glycine max), 3'ss of exon 7
------gtcagtatct-gcttgtgtctttggatttgctttatatttttgtatgcagatttgatggct---aacacagtacaacttgatcttatattttttccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAG
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gtgagtttagatacatagagtattttcttaggtt-attatacagctcaaattacaaatctgacatttccaaattccatgcatttggaacttg-accttgtttgttgtagGTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G07480.2 (Glycine max), 3'ss of exon 7
gtcagtatctgcttgtg--------tctttggatttgctttatatttttgtatgcagatttgat-ggctaacacagtacaacttgatcttatattttttccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAG
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gtcagtttagatatgaagcaataatttttctgggttattgaatggctcaaaatccaaataaactcaacaaattaaatgcatatggaacttgtccttgttttg---tagGAGTGAAAATATGGTTTCTTGCTATTATCTACTTCATAGCAGGAATTCCTGGAGCATATGTCTTGTGGTATCGCCCATTATATCGTGCTTTTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110694691|gb|EE072020.1|EE072020EST: CCTTACATGGAATATTATAGCAACTACTACAGCATGGATTAAAGGGGAAG GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAG
genomic: CCTTACATGGAATATTATAGCAACTACTACAGCATGGATTAAAGGGGAAGgtcagtatct ... tccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcagatttgatggctaacacagtacaacttgatcttatattttttccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAG
tcttatattttttcc CT-rich tract
atcttatattttttcc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtatctgcttgtgtctttggatttgctttatatttttgtatgcagatttgatggctaacacagtacaacttgatcttatattttttccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT