Sequence
atgc intronic sequence ATGC exonic sequencegtgagtaaatttatcttatcaaatgacttgtcatttttgcatttgattgtctttagatggtttcaattaatggtggaatttacagGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G38010.1 (Glycine max), 3'ss of exon 7
gtgagtaaatttatcttatcaaatgacttgtcatttttgcatttgattgtctttagatggtttcaattaatggtggaatttacagGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTG
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gtgagtaatgtgtttctataagtta---tattgattttgcaatt--------ctgaaaattttctaatcctaatggtatgta--gGTTCGGCTTGTCCTGGAAGGTGTCGATAAGTTTAGCAATTTAATTGGGTCAGTGTATTATCCTGATGGTGAATCAGCAAAGGACCTGGCATTGGAGCTTG
upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G17050.4 (Glycine max), 3'ss of exon 7
gtgagtaaatttatcttatcaaatgacttgtcatttttgcatttgattgtctttagatggtttcaattaatggtggaatttacagGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTG
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gtaagtaatgtgtttctat-aagttatatga---ttttgcattt--------ctgaaaattttctaatccaaatggtatgta--gGTTCGACTTGTCCTGGAAGGTGTCGATAAGTTCAGCAATTTAATTGGGTCGGTGTATTATCCTGATGGTGAATCAGCAAAGGACCTAGCATTGGAGCTTG
upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G33320.1 (Glycine max), 3'ss of exon 7
gtgagtaaatttatcttatcaaatgacttgtcatttttgcatttgattgtctttagatggtttcaattaatggtggaatttacagGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTG
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gtgggtaatctgcttctgttacttattttgcttgtttcctttctgcgtgttttg---------taaataccaagtggacatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTTCAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTG
upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 7
gtgagtaaatttatcttatcaaatgacttgtcatttttgcatttgattgtctttagatggtttcaattaatggtggaatttacagGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTG
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gtgggtaatctgcttctgt-----aacttat----tttgcatgtttcctttctgcgggtattgtaaacaccaagtgggcatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTACAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatttttgcatttgattgtctttagatggtttcaattaatggtggaatttacagGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTG
aattaat putative branch site (score: 3)
tttcaattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtaaatttatcttatcaaatgacttgtcatttttgcatttgattgtctttagatggtttcaattaatggtggaatttacagGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT