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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgatttaatatttgcgtaactctttatcgtcctctttttatataattaatgatgcttttatatttccttttacttttcattctgaatttggctagggtgggtcatgcaaagtaggcatcacaaagtatcaagtcaataacatttttggattcccactgcttgatatttgcagGACATAGCAGTTGTCCCTCTCTTAGTCATACTTCCAGTGCTAGAAAGTCAG

Basic information

species Vitis vinifera
transcript Vv00s0282g00020.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 8
gtacgatttaatatttgcgtaactctttatcgtcctctttttatataattaatgatgcttttatatttccttttacttttcattctgaatttggctagggtgggtcatgcaaagtaggcatcacaaagtatcaagtcaataacatttttggattcccactgcttgatatttgcagGACATAGCAGTTGTCCCTCTCTTAGTCATACTTCCAGTGCTAGAAAGTCAG
                                                                        | || | |  |  | ||      |||  ||    ||   | ||  | |    | ||  |  |   ||| |  ||| | | ||  |  |||||| ||||  |||||| |||| ||||||||||| ||||||||||||||| | ||||| || |||
------------------------------------------------------------------------tgacatcttctgataaacagttgtagattgataaataatatgtcagtaaacaacagcttttatataattaattttgttgcttttc--tgcttgctattc-cagGACTTAGCCGTTGTCCCTCTTTTAGTCATACTTCCAATACTAGAGAGCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706912|gb|FC056800.1|FC056800
EST:     AGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAG                         GACATAGCAGTTGTCCCTCTCTTAGTCATACTTCCAGTGC
genomic: AGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgtacgattta ... atatttgcagGACATAGCAGTTGTCCCTCTCTTAGTCATACTTCCAGTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacaaagtatcaagtcaataacatttttggattcccactgcttgatatttgcagGACATAGCAGTTGTCCCTCTCTTAGTCATACTTCCAGTGCTAGAAAGTCAG
               tcaataacattttt  TA-rich tract