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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGA

Basic information

species Vitis vinifera
transcript Vv00s0265g00120.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os05g45490.1 (Oryza sativa), 3'ss of exon 7
gtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttg---cagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGA
            ||| |  |||| |||      |  ||    | | ||||  |   |   | || |||    | || |  | |  |||    |||||| |||||||| || || ||  | || || |||||||| || |  || || || || |||||||||||||| |||||||||||||| || ||||||||
-----------gtcagtgatctcattgaa---gtatggcgaaaacagttcagttactttctgagattttaactgtcctttttgcattggtttagATGTCCCTGAAGGTTGTGTCATCATCAGAGAGCACATTCCCATCACGAATCTCTTCACATGCCTTTGGTTCAATGAAGTTGACCGTTTCACCTCCAGGGA

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G24770.1 (Glycine max), 3'ss of exon 7
gtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGA
||||||  ||   | ||| | | ||| | |    |  |||  | ||||| |||  ||  || |      || |||||         ||||||||| |||||||| || ||||| ||| | || ||  |||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||
gtaggtagaactgccttcctgtatttatctaggatgagttgcacctgtttcattgtttttttaaaaacttg-tttcaaatg----ctgcagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTACTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G31680.1 (Glycine max), 3'ss of exon 7
gtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGA
||||||  ||   | ||| | |  || | |    |  |||  | ||||| |||  ||  || |      |  |||||  |      | ||||||| |||||||| || ||||| ||| | || ||  |||||||||||||||| ||| |||| ||||||||||| ||||||||||| |||||||| |||||
gtaggtaaaactgccttcctgtacttatctaggatgagttgcacctgtttcattgtttttttaaaaacatt-tttcaaacg----ctacagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTGCTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G08090.1 (Glycine max), 3'ss of exon 7
gtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGA
||| |    | |   | | | || |||||   ||  | |   |   ||||    | |       || ||    || |||      |||||||||| ||||||||||| || || ||| | || ||  |||| || ||||| || ||||| || ||||||||||| ||||||||||| || ||||| |||||
gtaagct--aaactttgcgtttccttgttag-atgagatgcaactggttctggttctt------ttctcaaccttgatggctaacttgcagATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATCTTTTTACATGTCTTTGGTTCAATGAAGTTGACCGATTCACTTCTAGGGA

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G28240.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtt-tgcagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGA
||| |||        |   |   | ||| |  | ||   |||    | || | |  | ||    |   |   | |   | |||| | |||||| || || || || || || ||| |||| || ||  |||| || |||||||| || ||||| ||||||||||||||||||||||| || ||||| || ||
gtatgtct----ctttagcttattctgtctaaaatccccttttcgggatcaaacactaataatatagacaactatatggttgggctatgcagACGTACCCGAGGGTTGTGTCATTTTAAGAGAGCATGTTCCCATAAGCAACCTCTTCACTTGTCTTTGGTTCAACGAAGTTGACCGATTCACTTCTAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGA
                  tttcatt  TA-rich tract