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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttatagaacagactgctggtgttctgtaatattagttacttttatttttacagtctccttttagacctggctatcctttttcttacttttaaagttctatttctgtatccactgcttttaatgttgattttccttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAAGTTGGTTAATCAGCTTCTAGAAAAAGCACAGACACAGGCTGCTCGATGA

Basic information

species Vitis vinifera
transcript Vv00s0252g00070.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544009|gb|CF512241.1|CF512241
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|71888199|gb|DT037254.1|DT037254
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110363505|gb|EC927099.1|EC927099
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110390743|gb|EC955669.1|EC955669
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|351035098|gb|FQ458455.1|FQ458455
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|34543920|gb|CF512152.1|CF512152
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|30302336|gb|CB979130.1|CB979130
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|349827029|gb|FQ421302.1|FQ421302
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110361713|gb|EC925206.1|EC925206
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|45770682|gb|CN006534.1|CN006534
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110422588|gb|EC988915.1|EC988915
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110709660|gb|EE085316.1|EE085316
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCCAATGT                         GTATCAACCAGATTATAGACCACACCAAGG
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAAC-AGATTATAGACCACACCAAGG
EST: gi|30299800|gb|CB976594.1|CB976594
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|30302404|gb|CB979198.1|CB979198
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGANNNNNNNAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|351019002|gb|FQ426501.1|FQ426501
EST:     ATTGATTCANAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|71883037|gb|DT032092.1|DT032092
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110385422|gb|EC949946.1|EC949946
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|46918748|gb|CN548077.1|CN548077
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110701694|gb|EE079554.1|EE079554
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110374343|gb|EC939024.1|EC939024
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110690210|gb|EE067120.1|EE067120
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|26262647|gb|CA813710.1|CA813710
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAATAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|352768500|gb|FQ467456.1|FQ467456
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110428950|gb|EC995434.1|EC995434
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|34543854|gb|CF512086.1|CF512086
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|32459206|gb|CD800380.1|CD800380
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110415996|gb|EC981946.1|EC981946
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaagttctatttctgtatccactgcttttaatgttgattttccttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAAGTTGGTTAATCAGCTTCTAGAAAAAGCACAGACACAGGCTGCTCGATGA
                                       ttttccttgctttc  CT-rich tract
                           ttttaatgttgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttatagaacagactgctggtgttctgtaatattagttacttttatttttacagtctccttttagacctggctatcctttttcttacttttaaagttctatttctgtatccactgcttttaatgttgattttccttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAAGTTGGTTAATCAGCTTCTAGAAAAAGCACAGACACAGGCTGCTCGATGA

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