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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattttctccctgaacacccttgcatatttttcctcaagatatggagattttaggcagtggttcttattagtaaatttcatcaacttcatatgttcttcccatgcttagGTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG

Basic information

species Vitis vinifera
transcript Vv00s0233g00030.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os10g40555.1 (Oryza sativa), 3'ss of exon 7
gtaatattttctccctgaacacccttgcatatttttcctcaagatatggagattttaggcagtggttcttattagtaaatttcatcaacttcatatgttcttcccatgcttagGTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG------------------------------
        |      |  ||||    ||| |  | |    |||   |||     ||| | |       || || |||  | |  | || ||||  ||  ||    |   | ||||| | ||||| || |||||||| |||||||||||||||||||| || |||||| | || || |||||||                              
-------gtaaggaatatacacaaccgcacagctgtttcgaagcactgg-----ttaagtacca----ttgtt-gtatttgtttttaa-ttcaactgcgctcttga-attcagGTTCTTGAGGTTCGACCTGTGATAGACTGGAACAAGGGGAAAGCTGTGGAATTTTTGCTGGAGTCACTTGGACTATGTGGGAAAGAAGATGTTCTTCCTA

upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G178546_T01 (Zea mays), 3'ss of exon 8
gtaatattttctccctgaacacccttgcatatttttcctcaagatatggagattttaggcagtggttcttattagtaaatttcatcaacttcatatgttcttcccatgcttagGTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG------------------------------
        |      |   |||  ||| |    |||||| |  | |   |  | ||    ||  |||        | ||||  || ||  |   ||     || |      ||||||| |||||||||||||| ||||| |||||||| || ||||| || || ||| | || ||||| ||||                              
-------gtgaggattatgcactgttgtaaggctttccttatcaaa-atatttgttgtaaagcagtt--------tgaattggattaatattcaatcacactctccaatccagGTTTTTGAGGTCCGTCCTGTTATTGATTGGAACAAAGGTAAAGCTGTGGAGTTTTTACTTGAATCGCTTGGGCTCAGCGAGAGTGAAGATGTTCTCCCTA

upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G14780.1 (Glycine max), 3'ss of exon 7
--------------------------------------------------gtaatattttctc-cctgaacacccttgcatattttt--cctcaagatatggagattttaggcagt---ggttcttattagta-aatttcatcaacttcat-------atgttcttcccatgctt---------agGTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG
                                                   |||| |||   |   | |  |   || |  |||| |  | | |  |  | || |||  ||   ||    |  ||   ||||  ||||  || | || |||       || |  | || ||| ||         |||||||||| || |||||||||||||| ||||| || || ||||| ||||||||| | || ||||| || |
gtatgtatgacgagcattcttaattggaaaatagacactttgttcttagcataatttttaaacattttatgatagttactaatttataactttagtaactcgatattcaagtttgttcaagcactccatagtgtaattcaattagctacatcataaatatctcttccctatgttttggtgtggtagGTTTTAGAAGTTCGTCCTGTGATTGATTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAG

upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G22590.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaatattttctccctgaacacccttgcatatttttcctcaagatatggagattttaggcagtggttcttattagtaaatttcatcaacttcatatgttcttccc---atgcttagGTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG------------------------------
                                   | ||   |  ||  | ||      |  |||||  |  || || ||   |  | ||| | ||  | ||      ||| | ||||||||||||| |||||||||||||| |||||||| || |||||||| || |||||  | || || || |                              
----------------------------------gtacttgtggaataaacatc----actctggtttctcatattagatccaaataccttaacatagttttgttgatatgatcagGTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAGTTTCTGTTAGAGTCTCTCGGATTAAGCAACAACGATGAGTTCCTCCCAA

upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaatattttctccctgaacacccttgcatatttttcctcaagatatggagattttaggcagtggttcttattagtaaatttcatcaacttcatatgttcttcccatgctta-gGTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG
                               ||| |  | |   ||  |||||  |  ||  |     ||| |  |   | | |    ||| ||      ||    || | | |||||||||||| ||||||||||| ||||||||||| || | ||| || || |||||  | ||||| || |
------------------------------gtttgtgattagctta-agagatacttagc--ttacgtttaatcatcggtcttaatttcttgattatcattttttgtgttaaagGTTTTAGAGGTTCGTCCTGTGATAGACTGGAACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATCTCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagtggttcttattagtaaatttcatcaacttcatatgttcttcccatgcttagGTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG
                                       ttcttcccatgctt  CT-rich tract
       ttcttattagtaaatt  TA-rich tract