Sequence
atgc intronic sequence ATGC exonic sequence...aggtgccatgcttatgaagatcaaaccatagtcattataaccatatatcctgcaaccagaagcaaattttgtactcccctttacttatttcttcttacagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G101181_T02 (Zea mays), 3'ss of exon 7
aggtgccatgcttatgaagatcaaa-ccatagtcattataaccatatatcctgcaaccagaagcaaattttg--tactcccctttactt---atttcttctta-cagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT
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------catcattatagatgccaaagctccaatcattg-gtcggcagattgtttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G03640.1 (Glycine max), 3'ss of exon 8
aggtgccatgcttatgaagatc----aaaccatagtcattataaccatatatcctgcaaccagaagcaaattttgtactcccctttacttatttcttcttacagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT
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--ttgccatatatataagacttcttaaagttgaaactaat-taactttatgctgatatgaaatgaatgagttttttcctcactcttgaat-catgataaaacagGATTTGAGCCCAGATGGAGAACGGAAGCGAGGGAAATGTCCTCTTAGTCCTCATGAAGTGGGTTTGATGCTGCGGGCACTTGGCTTTTCAAATGACACAT
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G41740.1 (Glycine max), 3'ss of exon 7
aggtgccatgcttatgaagatcaaaccatagtcatta-taaccatatatcctgcaaccagaagcaaattttgtactcccctttacttatttcttctta-----cagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT
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-----ttttgccatataagatttc-ttacagttgaaactaattaactttttgctgatatgaaacgaatgagttttccctcaatcctcatgaatcatgaaaaagcagGATTTGAGCCCAGATGGAGAACGGAAGCGAGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTTTGATGCTGCAGGCACTTGGCTTTTCAAAAGATACAT
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G15170.1 (Glycine max), 3'ss of exon 7
aggtgccatgcttatgaagatcaaaccatagtcattataaccatatatcctgcaaccagaagcaaattttgtactcccctttactta-----tttcttct-----tacagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT
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-------attatggcggaagttgatccat-gtagccg--accccacctagtgggataaggcgttgttgttgttgttgttgttgttgagccattaccttgtggtgatacagGATTTGAGCCCTGATGGAGAGCAGAAGCGTGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTCTGATGCTGCGAGCACTTGGTTTTACAAATGACACAT
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G04720.1 (Glycine max), 3'ss of exon 7
----aggtgccat------gcttatgaagatcaaaccatagtcattataaccatatatcctgcaaccag---aagcaaattttgtactccc--ctttacttatttcttctta----------cagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT
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gtaagactgccatcctctgacttctagtaataaaatttta-tcatattggcaagatgata-ataattagttaaaactagtttttttttgctgattttgttgagccattaccatgtggtaattcagGATTTGAGCCATGATGGAGAGCGGAAGCGTGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTTTGATGTTGCGAGCACTTGGTTTTACAAACGACACATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110710679|gb|EE087026.1|EE087026EST: TAAGGAAACGCTGGGCAACATTACCT GATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCT
genomic: TAAGGAAACGCTGGGCAACATTACCTgtgagaatcc ... cttcttacagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCT
EST:
gi|110731196|gb|EE109144.1|EE109144EST: AGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTACCT GATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCT
genomic: AGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTACCTgtgagaatcc ... cttcttacagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcctgcaaccagaagcaaattttgtactcccctttacttatttcttcttacagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT
ttttgtactccccttt CT-rich tract
tttacttatttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aggtgccatgcttatgaagatcaaaccatagtcattataaccatatatcctgcaaccagaagcaaattttgtactcccctttacttatttcttcttacagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - -ccatgct
- - - - - - - - - - -caaacca
- - - - - - - - - - - - - - - - - - ataacca
- - - - - - - - - - - - - - - - - - - - - - - -tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa