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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctttgggtctttgttttcattggctgaactgcttactgttatttttggaaattctttttatcacctagtcaatatcttatatagtcaaatgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTTAGTGAAGCCAATTTAAAAGAAATATTGCACTTCTGTTACCAAGAAAACT

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 5
--ttctttgggtctttgttttcattggctgaactgcttactgttatttttggaaattctttttatcacctagtcaatatcttatatagtcaaatgtgat-cagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTTAGTGAAGCCAATTTAAAAGAAATATTGCACTTCTGTTACCAAGAAAACT
  |||||    | | | || |  |        ||| || |    |  | | | | ||  |  ||||   || |||   | | || |  |    | |     |||| ||||||||||||||||| ||||| ||||| |||||||| || || ||||||||||  ||  |||| ||| |  |  | ||||| | ||| || ||||
atttcttcccctttcttttattttcaatcatgctgtttgcataaaaatgtagca-tttatactatc-tgtattcagc-tttgatgttattttttcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM5G840582_T01 (Zea mays), 3'ss of exon 6
ttctttgggtctttgttttcattggct--gaactgcttactgttatttttggaaattctttttatcacctagtcaatatcttatatagtcaaatgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTTAGTGAAGCCAATTTAAAAGAAATATTGCACTTCTGTTACCAAGAAAACT
|    ||     ||  |  ||| ||||   ||     |||    || | |    |||| ||       ||  ||| |  |     |   | |   || | |||| ||||| | |||||||||||| || |||||||| ||||| ||||| ||||||||||| ||| |||  ||| |  |||  |  || ||||| |||||||
tgtcgtgaacactttgtgacatgggcttcaaataatgtacatacatatgtatgcattcattccgct--ctgatcatttcccccccttacctacgatgcttagGTTCGAGCGACGGTGATTATAAATCCAGGAAATCCCACTGGCCAGTGCCTTAGTGAAGCAAATATAAGGGAACTTGTGCGATATTGCTACCATGAAAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349817756|gb|FQ407745.1|FQ407745
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351019694|gb|FQ439511.1|FQ439511
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351026306|gb|FQ428318.1|FQ428318
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|30299046|gb|CB975840.1|CB975840
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAGGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|110389517|gb|EC954364.1|EC954364
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351029331|gb|FQ436725.1|FQ436725
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|28960785|gb|CB340400.1|CB340400
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351013592|gb|FQ429733.1|FQ429733
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGAAA-AACT                         GTCCGAGCAATGGTGAT-ATAAAC
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAAC
EST: gi|351049118|gb|FQ428982.1|FQ428982
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351036202|gb|FQ464047.1|FQ464047
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTCGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351023682|gb|FQ448233.1|FQ448233
EST:     AAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: AAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351018395|gb|FQ439207.1|FQ439207
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|27580138|gb|CB002833.1|CB002833
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|161712960|gb|FC062086.1|FC062086
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATA-CT                         GTCCGAGCA-TGGTGAT-ATAAACC-TGGAA
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAA
EST: gi|349819777|gb|FQ404499.1|FQ404499
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCACCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATTAACCCTGGGAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349833249|gb|FQ416627.1|FQ416627
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|27582523|gb|CB005218.1|CB005218
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349807317|gb|FQ401309.1|FQ401309
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCCACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|27579398|gb|CB002093.1|CB002093
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|29785236|gb|CB342047.2|CB342047
EST:     TAAATAACCTTCACTCGTCAGATGCAGCAGCTCGCTCCAAAGGAGTAACT                         GTCCGAGCANTG-TGGATTATAAACCCT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTG-ATTATAAACCCT
EST: gi|71856263|gb|DT005318.1|DT005318
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349808113|gb|FQ403300.1|FQ403300
EST:     TAAATAACCTTCACTCGTCAGTTGCAGTAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGGAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|110361483|gb|EC924957.1|EC924957
EST:     CAGTTGCAGCAGCTCGCTCCAAAGGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCT
genomic: CAGTTGCAGCAGCTCGCTCCAAA-GGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCT
EST: gi|110689868|gb|EE066470.1|EE066470
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351048786|gb|FQ449654.1|FQ449654
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351040447|gb|FQ434580.1|FQ434580
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACC                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|161706058|gb|FC056227.1|FC056227
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349820046|gb|FQ404768.1|FQ404768
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349808629|gb|FQ405773.1|FQ405773
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349809424|gb|FQ411922.1|FQ411922
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCACCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACAGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349821055|gb|FQ404308.1|FQ404308
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|30251568|gb|CB969301.1|CB969301
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCGATGGTGATTATAAANCGAGNAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349808686|gb|FQ405830.1|FQ405830
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349821509|gb|FQ408068.1|FQ408068
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349830529|gb|FQ416839.1|FQ416839
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCCATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349823894|gb|FQ415305.1|FQ415305
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|110707090|gb|EE083187.1|EE083187
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351025435|gb|FQ435127.1|FQ435127
EST:     AAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: AAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|110687378|gb|EE064734.1|EE064734
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351012478|gb|FQ427079.1|FQ427079
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|352794077|gb|FQ479319.1|FQ479319
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGG
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGG
EST: gi|71857816|gb|DT006871.1|DT006871
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351029614|gb|FQ427454.1|FQ427454
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|349811946|gb|FQ410743.1|FQ410743
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|30127296|gb|CB912635.1|CB912635
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|30251605|gb|CB969338.1|CB969338
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCGATGGTGATTATAAACCCTGGAAATCCTACTGG
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGG
EST: gi|351024976|gb|FQ433393.1|FQ433393
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|110698273|gb|EE075615.1|EE075615
EST:     TNAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGA-TAACT                         GTCCGAGNCA-TGGTGATTATAA-CCCTGGAAATCCTACTGGTCAGTGTCT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAG-CAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCT
EST: gi|351032478|gb|FQ458843.1|FQ458843
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAG-AATAACT                         GTCCGAGCAATGGTGATT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATT
EST: gi|71874947|gb|DT024002.1|DT024002
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTT
EST: gi|351054831|gb|FQ462861.1|FQ462861
EST:     TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCAAAAGGAATAACT                         GTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCT
genomic: TAAATAACCTTCACTCGTCAGTTGCAGCAGCTCGCTCCAAAGGAATAACTgtaagtacgc ... atgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggaaattctttttatcacctagtcaatatcttatatagtcaaatgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTTAGTGAAGCCAATTTAAAAGAAATATTGCACTTCTGTTACCAAGAAAACT
     aaattctttttatca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttctttgggtctttgttttcattggctgaactgcttactgttatttttggaaattctttttatcacctagtcaatatcttatatagtcaaatgtgatcagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTTAGTGAAGCCAATTTAAAAGAAATATTGCACTTCTGTTACCAAGAAAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - tggctga
- - - - - - - - - - - - - - - -tgcttac