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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgcgattgagttgtccatttagataagatgtgtctgtctattcgtttatgcatatttgttagtagaagcttgtgtgacttaataactactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 7
tctgcgattgagttgtccatttagataagatgtgtctgtctattcgtttatgcatatt-tgttagtagaagcttgtgtgactt-aataactactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG
   ||      ||  ||  ||         |  |       ||   ||  ||  ||      | ||  | | || | |||| | || ||||   || |||||||||| |  |  || | ||||||||| |||||| ||||||||||||| |||| ||||||||| ||||| |||||||||||||| |||||||||
--ggcagcactgtattctgttcttgctccttaagatcagaaatatattattgtgtaccactcttgtgtatgtttttatgacgtgaacaactttgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCTACTGCTTATGCACGTCTGTATGATTATGCACGCATTCGCAAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 7
----tctgcgattgagttgtccatttagataa-gatgtgtctgtcta---ttcgtttatgcatatttgttag-tagaagcttgtgtgacttaataactactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG
    | |   |  |  |  |  ||   | ||  ||||  | |  |||   ||| || ||   |   ||| |  |    | || ||||   | | ||     || | ||| |||| |||  ||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| |||||||||||||||| |||| | ||||||
gtattgttgcagggtatattttatcatggtagcgatgcttttagctacatttcattgatattttcatgtcatctcatggtttttgtggtgtgaaaatcttgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTCTATGATTATGAACGTGTACGCAAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 8
------------------tctgcgattga-gttgtccatttagataagatgtgtctgtctattcgt-ttatgcatatttgttag-tagaagcttgtgtgacttaataactactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG
                  | |   || |  ||  | | ||||| ||   |   |   | | ||| | | |  | | | ||| |  | |  | || |||||  | | ||     || ||||| |||| |||   || ||||||||||| |||||| |||| |||||||| ||||| |||||||| ||||| |||||||||| |||| | ||||||
gtatcattgcaggatatttttatcatggttgtgatgcttttagctacatttcattgatattttcatgtcacccttttatgtcatcttgtggtttttgtgatgtgaaaatcttgaaatgcagATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 7
-----tctgcgattgagttgtccatttagataagatgtgtctgtctattcgtttatgcatatttgttagtagaagcttgtgtgacttaataactactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG
       | || |  |||||    |   ||  ||||        |||   |||| |   |    | |  |  ||  || |      | |||     |     ||| |||| || || || |||||||||||||||||  | ||||| ||||||||||||||||||||||| |  || || || || || || ||| ||
gcgcagtttcgttgcagttgattttcccga--agattatgaaaactaggagtttttttctgacagattctctaacttttttca---tcatattctttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579405|gb|CB002100.1|CB002100
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|352763949|gb|FQ465399.1|FQ465399
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAAACCAAAACTAAAAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|352768598|gb|FQ467810.1|FQ467810
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGGAAAAAGTGCCACACTC
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTC
EST: gi|110727742|gb|EE104853.1|EE104853
EST:     CAATGCCATATANATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGC
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGC
EST: gi|351052991|gb|FQ456598.1|FQ456598
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACGCTCTTC
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTC
EST: gi|351036425|gb|FQ457138.1|FQ457138
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGNNNNNNNTGCCACGCTCTTCAGACCAAAACTAATAGTTGCTGG
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGG
EST: gi|351042407|gb|FQ442874.1|FQ442874
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGGAAAAAGTGCCACGCTCTTCAGACCAAAACTAAAAGTTGCTGGTG
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTG
EST: gi|351018926|gb|FQ426425.1|FQ426425
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCCAAACTAATAG
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAG
EST: gi|351055450|gb|FQ442048.1|FQ442048
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGAACAG                         TTGGAAAAAAGTGCCACGCTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|29785435|gb|CB342421.2|CB342421
EST:     AATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGAG-ATG                         GAGGAAAAAAGTGCCACACTCTT
genomic: AATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCA-Ggtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTT
EST: gi|352786291|gb|FQ478902.1|FQ478902
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACGCTCTTCAGACCAAAACTAATAGTTGCTGG
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGG
EST: gi|352772603|gb|FQ472078.1|FQ472078
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|351049398|gb|FQ449999.1|FQ449999
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAAGACCAAAACT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCA-GACCAAAACT
EST: gi|352781312|gb|FQ467758.1|FQ467758
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAAAAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|352769306|gb|FQ471455.1|FQ471455
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|352781111|gb|FQ466424.1|FQ466424
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         G
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcag-
EST: gi|352781111|gb|FQ466424.1|FQ466424
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         G
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcag-
EST: gi|352776558|gb|FQ474860.1|FQ474860
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACT
EST: gi|351054819|gb|FQ462849.1|FQ462849
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCCAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|294966171|gb|GW839394.1|GW839394
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|110719906|gb|EE095430.1|EE095430
EST:     AATGCCATAAAGATTGAATGAGAGCACTGGCTACATTGACTTAGGACCA-                         TTGGAAAAAAGTGCC
genomic: AATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACT-ATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCC
EST: gi|351026152|gb|FQ428164.1|FQ428164
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAA-TGCCACACTCTTCAAACCAAAACTAATA
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATA
EST: gi|351016274|gb|FQ446134.1|FQ446134
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|351016424|gb|FQ423851.1|FQ423851
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|110373188|gb|EC937406.1|EC937406
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|352781814|gb|FQ469112.1|FQ469112
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAAACCAAAA-TAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|352777749|gb|FQ466802.1|FQ466802
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAA
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAA
EST: gi|352774203|gb|FQ474726.1|FQ474726
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTT
EST: gi|352782191|gb|FQ470093.1|FQ470093
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAA-GTGGCACACTCTTCAGACCAAAACTAATAGTTG
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTG
EST: gi|352781785|gb|FQ469083.1|FQ469083
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAA
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAA
EST: gi|352781462|gb|FQ468306.1|FQ468306
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGAC-AAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|32250119|gb|CD715938.1|CD715938
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|351038704|gb|FQ464570.1|FQ464570
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCCCGCTCTTCAGAACAAAACTAATATTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|352772664|gb|FQ472139.1|FQ472139
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAAACCAAA
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAA
EST: gi|37184833|gb|CF604187.1|CF604187
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|351036770|gb|FQ457483.1|FQ457483
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         GTGGAAAAA-GTGCCACACTCTTCAGACCAAA-CTAA
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAA
EST: gi|351053957|gb|FQ441723.1|FQ441723
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|30299931|gb|CB976725.1|CB976725
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|352769660|gb|FQ468588.1|FQ468588
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCAC
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCAC
EST: gi|352780985|gb|FQ466298.1|FQ466298
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCNAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|352789755|gb|FQ478570.1|FQ478570
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACGCTCTTCAGACCAAAACTA-TAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
EST: gi|349823773|gb|FQ415184.1|FQ415184
EST:     CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG                         TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT
genomic: CAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcc ... ctaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatgcatatttgttagtagaagcttgtgtgacttaataactactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG
                                           tactaat  putative branch site (score: 1)
                                   ttaataactactaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctgcgattgagttgtccatttagataagatgtgtctgtctattcgtttatgcatatttgttagtagaagcttgtgtgacttaataactactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG

- - - - - - - - ccattta
- - - - - - - - - - - -gataaga
- - - - - - - - - - - - - - - - tgtctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtg