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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgcgattaagttgtccatttagataagatgtgtctgtctattcgtttatgcatatttgttagtagaagcttgtgtgacttaatagctactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACATATTCGCAAG

Basic information

species Vitis vinifera
transcript Vv00s0211g00070.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 7
tctgcgattaagttgtccatttagataagatgtgtctgtctattcgtttatgcatatt-tgttagtagaagcttgtgtgactt-aatagctactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACATATTCGCAAG
   ||      ||  ||  ||         |  |       ||   ||  ||  ||      | ||  | | || | |||| | || | ||   || |||||||||| |  |  || | ||||||||| |||||| ||||||||||||| |||| ||||||||| ||||| |||||||||||||  |||||||||
--ggcagcactgtattctgttcttgctccttaagatcagaaatatattattgtgtaccactcttgtgtatgtttttatgacgtgaacaactttgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCTACTGCTTATGCACGTCTGTATGATTATGCACGCATTCGCAAG

upper sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 7
----tctgcgattaagttgtccatttagataa-gatgtgtctgtcta---ttcgtttatgcatatttgttag-tagaagcttgtgtgacttaatagctactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACATATTCGCAAG
    | |   |     |  |  ||   | ||  ||||  | |  |||   ||| || ||   |   ||| |  |    | || ||||   | | |      || | ||| |||| |||  ||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| |||||||||||||||| || | | ||||||
gtattgttgcagggtatattttatcatggtagcgatgcttttagctacatttcattgatattttcatgtcatctcatggtttttgtggtgtgaaaatcttgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTCTATGATTATGAACGTGTACGCAAG

upper sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 8
------------------tctgcgattaa-gttgtccatttagataagatgtgtctgtctattcgt-ttatgcatatttgttag-tagaagcttgtgtgacttaatagctactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACATATTCGCAAG
                  | |   ||    ||  | | ||||| ||   |   |   | | ||| | | |  | | | ||| |  | |  | || |||||  | | |      || ||||| |||| |||   || ||||||||||| |||||| |||| |||||||| ||||| |||||||| ||||| |||||||||| || | | ||||||
gtatcattgcaggatatttttatcatggttgtgatgcttttagctacatttcattgatattttcatgtcacccttttatgtcatcttgtggtttttgtgatgtgaaaatcttgaaatgcagATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAG

upper sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 7
-----tctgcgattaagttgtccatttagataagatgtgtctgtctattcgtttatgcatatttgttagtagaagcttgtgtgacttaatagctactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACATATTCGCAAG
       | || |  |||||    |   ||  ||||        |||   |||| |   |    | |  |  ||  || |      | |||     |     ||| |||| || || || |||||||||||||||||  | ||||| ||||||||||||||||||||||| |  || || || || |  || ||| ||
gcgcagtttcgttgcagttgattttcccga--agattatgaaaactaggagtttttttctgacagattctctaacttttttca---tcatattctttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatgcatatttgttagtagaagcttgtgtgacttaatagctactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACATATTCGCAAG
                                           tactaat  putative branch site (score: 1)
        atatttgtta  TA-rich tract