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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaggagcccccatgatatcttttaattgaggaaattctgtatggattttattttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAG

Basic information

species Vitis vinifera
transcript Vv00s0207g00150.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G38680.1 (Glycine max), 3'ss of exon 10
gtaaaaggagcccccatgatatcttttaattgaggaaattctgtatggattttattttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAG
|||||    |     ||  ||  | | || | |  || |   | ||| |  |  |   |  ||   ||||  |  | |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| | || ||    || || || ||||| || ||||||
gtaaacattgagagaatagtag-tataaagtcattaattaaagaatgaaactcttaaccatatttgcttggttcatgcagGCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAGAATACAATACTAAAGTGCCGGATGTCTCGCCCGGGACAG

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G06610.1 (Glycine max), 3'ss of exon 4
gtaaaaggagcccccatgatatcttttaattgaggaaattctgtatggattttattttctcatgatcttgcata----ttacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAG
|||||    |      || || |||  | |  |  || |   | ||| |  |  |   | |||   ||||| |     || |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | || ||    ||||| || ||||| || ||||||
gtaaacattgagagagtggtagcttaaagtc-attaattaaaggatgaaactcttaagcacatttacttgcttggtctttgcagGCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAAAATACTATACTCAAGTGTCGGATGTCTCGCCCGGGACAG

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G25820.1 (Glycine max), 3'ss of exon 7
--------------------gtaaaaggagcccccatgata----tcttttaattg-aggaaattctgtatggatttt---attttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAG
                     |  ||    |    | |||     || |  || |  ||  ||  || | ||  |||    | || ||||   |  |||    | |||||||| |||||  |||| ||||| ||||| ||||||||||||||||||||  | || ||||| || ||  |  |||| || || |||
gtaaaatctaagagtaatagctttaatagtctattaggatgaaagtcatgaaactatagttaagcctatctgcttttgctgagttgctcaatgtgatgccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTTGGGTGCCGGTTGCCTCGCCCTGGGCAG

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 8
---------------------gtaaaagg--agcccccatgata-tcttttaattgaggaaattctgtatggatt---ttattttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAG
                      ||||  |  |      |||| | || |  || | ||  ||  || | |   ||   | | || ||||   |  |||    | |||||||| |||||  |||| ||||| ||||| ||||||||||||||||||||  | || ||  | || ||  |  |||| || ||||||
gtaaaatctaagagtaatagcttaaatagtcaattaggatgaaagtcgtgaaacttagttaagcctatcttcttttgctgaattgctcaatgtgatgccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTCAGGTGCCGGTTGCCTCGCCCTGGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattgaggaaattctgtatggattttattttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAG
 ttttaat  putative branch site (score: 3)
                  tatggattttatttt  TA-rich tract