Sequence
atgc intronic sequence ATGC exonic sequencegttcttcctttcccagaaaatttcctggaaaccatttttctatagcttccttgattaaaaaatattgtatctgtgaatgagtgaaggtcatttttacatgttacttcatgctagtgatcttctcatgaattatatgttgtctcattggtagGCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCCAAGGCAGAAGCACAATTGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0194g00260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G01560.1 (Glycine max), 3'ss of exon 9
gttcttcctttcccagaaaatttcctggaaaccatttttctatagcttccttgattaaaaaatattgtatctgtgaatgagtgaaggtcatttttacatgtta----cttcatgctagtgatcttctcatgaattat-atgttgtctcattggtagGCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCCAAGGCAGAAGCACAATTGAAA
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-----------------------------------------------------atcaagaaaaagctaattt-caattc--caaactatactttaaagtgctgaaatttttatgagcaagaaaaatttatgatcaattatgtccttgcatatatagGCAGAGATGCAACGATTAAAAGATAAGCTAGCTATATCAGAGAGAACAGCAAAGGCAGAGTCACAATTGAAG
upper sequence: Vv00s0194g00260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G12490.1 (Glycine max), 3'ss of exon 7
gttcttcctttcccagaaaatttcctggaaaccatttttctatagcttccttgattaaaaaatattgtatctgtgaatgagtgaaggtcatttttacatgttacttcatgctagtgatcttctcatgaattatatgttgtctcattggtagGCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCCAAGGCAGAAGCACAATTGAAA
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------------------------------------------------tatcaataaaaagctaatttcaattccaaactatgctttaaagtgctgaa-atttttatgagcaagaaaatttatgatcaattat--gtccttgcatatatagGCAGAGATGCAACGATTGAAAGATAAGCTAGCTATATCAGAGAGAACAGCAAAGGCAGAGTCACAATTGAAG
upper sequence: Vv00s0194g00260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G01060.1 (Glycine max), 3'ss of exon 4
gttcttcctttcccagaaaatttcctggaaaccatttttctatagcttccttgattaaaaaatattgtatctgtgaatgagtgaaggtcatttttacatgttacttcatgctagtgatcttctcatgaattatatgttgtctcattggtagGCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCCAAGGCAGAAGCACAATTGAAA
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---------------------------------------------------aaattggcaaaaacaattcaaatacattttctctccttatacttattcaaaatattgagcaagaactttcttcatcaagtgtatgtccttgaatatgtagGGAGAGATTCAACAGTTGAAAGACAAGCTAGCTATATCAGAGAGAACAGCTAGGGCAGAGTCACAATTGAAG
upper sequence: Vv00s0194g00260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G39740.1 (Glycine max), 3'ss of exon 5
gttcttcctttcccagaaaatttcctggaaaccatttttctatagcttccttgattaaaaaatattgtatctgtgaatgagtgaaggtcatttttacatgttacttcatgctagtgatct-tctcatgaattatatgttgtctcattggtagGCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCCAAGGCAGAAGCACAATTGAAA
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----------------------------------------------------aattcacaaaaacaattcaaataccttttctctccttatacttatttaaaatattgagcaagaactttctatcatcaagtgtacgtccttgcatatgtagGCAGAGATTCAACGGTTGAAAGACAAGCAAGCTATATCAGAGAGAACAGCTAAGGCAGAGTCCCAATTGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46918886|gb|CN548215.1|CN548215EST: ACAAAGTTATGCCTATTAAGCAATGGCCTGAAGAGAGAAGGCTACTTCAG GTTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCC
genomic: ACAAAGTTATGCCTATTAAGCAATGGCTTGAAGAGAGAAGGCTACTTCAGgttcttcctt ... tcattggtagGCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCC
EST:
gi|110392216|gb|EC957479.1|EC957479EST: ACAAAGTTATGCCTATTAAGCAATGGCTTGAAGAGAGAAGGCTACTTCAG GCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCC
genomic: ACAAAGTTATGCCTATTAAGCAATGGCTTGAAGAGAGAAGGCTACTTCAGgttcttcctt ... tcattggtagGCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgttacttcatgctagtgatcttctcatgaattatatgttgtctcattggtagGCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCCAAGGCAGAAGCACAATTGAAA
ttgtctc CT-rich tract
atgaattatatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcttcctttcccagaaaatttcctggaaaccatttttctatagcttccttgattaaaaaatattgtatctgtgaatgagtgaaggtcatttttacatgttacttcatgctagtgatcttctcatgaattatatgttgtctcattggtagGCTGAGACGCAGCGGTTAAGAGACAAACTAGCTATATCAGAGAGAACAGCCAAGGCAGAAGCACAATTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC