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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG

Basic information

species Vitis vinifera
transcript Vv00s0187g00030.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 12
-------------gtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
              |  | || ||  |    ||| ||  |||| | ||  ||      |    |   ||  |  || | | |   |  ||     || | |   |||||||||||||||||||||||||||| |||||||| ||||| |||||||||| | ||||||| || ||||| |||
gtgagtttgttgtctcattacttaaattcatctaatttcaattttttttaattgcaattgctatgctatagaacattaaactaatatctctca--ctatcatgtagCCTGCCCATGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAG

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 12
-------------gtactgacctatgtctgcctacttctaattctctta--tatcatttgtttgttagcatgcat---gatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
              |  | || ||  |    |||  |  | || |||||  |   |||  | || ||     |||    || | | |   |  ||  |  |  | |   |||||||||| ||||||||||||||||| |||||||| ||||| |||||||||| | ||||||| || ||||| |||
gtgagtttgtggtctcattacttaaattcatctaacttcatttttcttaattgcaattgctatgctatagaacattaaaattaaactaatatctctcc--ccatcatgtagCCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAG

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 12
-------------------------------------------------------------------gtactgacctatgtctgcctacttct----aattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcc--tcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
                                                                   | ||   || |||       |    |    |||     |  |   | |   |  ||  | || | |  | | ||   |||    ||  |  |||   |||||||||||||||| ||||||||||| |||||||| |||||  |||| |||  | ||||||| || ||||| |||
gtgagtccattctcactcctttgtcaagtaaaatccaatttggcttgaccagttgaccttaggataagcacatgccaatgaaaagaaaaaagtggaaaataaaaatgcaatctatacatactatgaagctttaa-acaatgatcctttttttcccccctgatttagCCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 10
gtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
       |||||   | |||  |  || |||   |||   | |  | || ||  ||| |  || | | ||  |||||||      ||  | |||||||||||||||| ||||||||||| ||| |||| |||||  | || |||  | ||||||| || ||||| |||
--gtaagcctat---tacctggtattacttcc--tatggaactgatatgcta-tatggaatattaaactgatacttccta-----tgttatagCCTGCCCATGAGAAGATTGGAGTTGTTGATGCTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAG

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 12
--------------------------------------------------gtactgacctatgtc--tgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtcttt--gaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
                                                    |    |  ||| |  ||   |     | |        |  ||    |   || ||| |    | |  ||  |   | ||| | |||  || | ||||||| |||||||| ||||||||||| |||||||| |||||  |||| |||  | ||||||| || ||||| |||
gtgagtccattctcacattttctcaaatcgtctaatttggtgtgaccttaagataagcacatgccaatgaaaaaaaaaagtgaaaaataaaaatgcaatctgtaacattctgtgtaactttaaactattctcctttttctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G14050.1 (Glycine max), 3'ss of exon 10
gtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
     | ||||| |   |  | | ||     || |||   | |  | || ||  ||| |  || | ||    | | | |  | |   | | |||||||||||||||| ||||||||||| ||| |||| |||||  | || |||  | ||||||| || ||||| |||
--gtaggcctatattacctgattact-----tcctatgaaactgatatgcta-tatgtaatattaaatccata-tacttgctatgatatatagCCTGCCCATGAGAAGATTGGAGTTGTTGATACTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAG

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 11
gtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaac--ttcctcgtctttg---aaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
    | || ||    | |    |  | |    |   ||| ||||        |  | |   |  |    | |||  ||  |  |  ||    ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||   |||| ||  | || | ||||
--gttaacatacaaatacaacttattcacaaacgcgtataattttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaacagCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G13000.2 (Arabidopsis thaliana), 3'ss of exon 11
-gtactgacctatgtctgcctacttctaattctct-tatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
  || | |  | || || | ||| |  | |  |   || |       | |||| |      |    |      |  |||||  |     ||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||| || |||| ||  | || | ||||
gttaatcattt-tgcctacataccttgactcttaaatacactggacatgtgtttggtaagttatctactaaaaagtttcctaataaaacaaacagCCTGCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAATCTCTTCCTTCTTTAGGCAGCCAG

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 12
----------------gtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaa--cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
                 |   |  |  ||| || |       |       | | | |||   | ||  |  |  ||||  | ||  |||  |  |   |   ||||  |||||||| |||||||| || ||||| || |||||||||||| || |||||||| ||||||| || ||||| ||||| 
gtaagaaaagagacacttgaagttcgttgtttgtcacgcaaaagacagagtttctaattatatcgtctgt-tatatgacga-atctgaatatattttacaccgaaatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S70_58V6.1 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------------------------gtactgaccta--tgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaa----cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG-------------------------
                                                                                                      ||||     |  | ||   ||  || | ||| ||| |     | | |   ||       ||  |||| |    | |   | |||||    |    |||||||| ||||| |||||||||||||||||| |||| ||||||   ||||    | | |  || ||    | |  |                         
gtaagtttatacgaagttgaatttcgtcagtcgtaggtgcagagcttacataactttctaattgcatcaacaaatggacacaagcttcggtggacttctttctactagttgaagtatcactctggttgttattttctcagtctctgtctgaattgttggatatc-tcatctactgaatggtttgtcttgatgatttgcagCCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCGGTTTGTGTTCCTCACAACCATTCAC

upper sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S70_58V6.2 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------------------------gtactgaccta--tgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaa----cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
                                                                                                      ||||     |  | ||   ||  || | ||| ||| |     | | |   ||       ||  |||| |    | |   | |||||    |    |||||||| ||||| |||||||||||||||||| |||| ||||||   ||||    | | |  || ||    | |  |
gtaagtttatacgaagttgaatttcgtcagtcgtaggtgcagagcttacataactttctaattgcatcaacaaatggacacaagcttcggtggacttctttctactagttgaagtatcactctggttgttattttctcagtctctgtctgaattgttggatatc-tcatctactgaatggtttgtcttgatgatttgcagCCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
                                   cttcctcgtcttt  CT-rich tract
                       atcatatt  TA-rich tract