Sequence
atgc intronic sequence ATGC exonic sequence...tttctttttacaactccttaagtgagcagggtctttattcccaagtgtgagtgtgtgttggttatctggttttcagactcagttgattctatttctgcagTAACATTTAGTCGATTAGAACCAGAAGGGAAGCTGGTTATGGGATTTAGAAAGGCTTCGACTGCTCCATCATCTGATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0181g00260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os07g37610.1 (Oryza sativa), 3'ss of exon 6
tttctttttacaactccttaagtgagcagggtctttattcccaagtgtgagtgtgtgttggttatctggttttcagactcagttgattctatttctgcagTAACATTTAGTCGATTAGAACCAGAAGGGAAGCTGGTTATGGGATTTAGAAAGGCTTCGACTGCTCCATCATCTGATCAG
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attgtgcttatctttctccatatgagaaacatttttgtttcttttaaaattggcttatgatttttttgacatcctagttcatgttgccatattttttcagTAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAAGGCAACAAATCTTTCTGCA---GAACAG
upper sequence: Vv00s0181g00260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G07350.1 (Glycine max), 3'ss of exon 8
tttctttttacaactccttaagtgagcagggtctttattcccaagtgtgagtgtgtgttggtta---tctg-gttttcagactcagttgattctatttctgcagTAACATTTAGTCGATTAGAACCAGAAGGGAAGCTGGTTATGGGATTTAGAAAGGCTTCGACTGCTCCATCATCTGATCAG
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-ctccccctccatttc--tgagtatgttgtaccaccatcttgtggt-tgatttgttgttagttgagttctatgttttgtggctgacctgaattgtttttctcagTAACATTTAGCCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCTGTGCCATCCGATCAG
upper sequence: Vv00s0181g00260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G31970.1 (Glycine max), 3'ss of exon 7
--tttctttttacaactccttaagtgagcagggtctttattcccaagtgtgagtgtgtgttggttatctggttttcagactcagttgattctatttctgcagTAACATTTAGTCGATTAGAACCAGAAGGGAAGCTGGTTATGGGATTTAGAAAGGCTTCGACTGCTCCATCATCTGATCAG
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gaatccttttgccttctgtgcttatgactcccccctgcaaaaccatttg-atttgttaattgagt-tctagttttttggctgacctgaattgtttttctcagTAACATTTAGCCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGTCATGCCATCTGATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgagtgtgtgttggttatctggttttcagactcagttgattctatttctgcagTAACATTTAGTCGATTAGAACCAGAAGGGAAGCTGGTTATGGGATTTAGAAAGGCTTCGACTGCTCCATCATCTGATCAG
agttgat putative branch site (score: 5)
ttctatttct CT-rich tract
attctattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttctttttacaactccttaagtgagcagggtctttattcccaagtgtgagtgtgtgttggttatctggttttcagactcagttgattctatttctgcagTAACATTTAGTCGATTAGAACCAGAAGGGAAGCTGGTTATGGGATTTAGAAAGGCTTCGACTGCTCCATCATCTGATCAG
- - - - - caactcc
- - - - - - - - - - - - - - - - - - - tcccaag
- - - - - - - - - - - - - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgttgg