1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acccattttaaaacatagcttggatggtgttatagatccttgttcagaagattagctgaaattagaacatcaatgttactaaactgttcttattattcagGCTCTGCAACGAATATTGCATTTGAGGAAGTATAATGGATGTATATCTTTTGTGCCTGCACCTGGCTTTGAAGCTTTTGGAGAGCCAAGTACTTACAAAG
species | Vitis vinifera |
transcript | Vv00s0181g00250.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGAGTCTGAAAAATATAGGTGGATGGGAAGCGCTCGTTTAGATTTCTAC GCTCTGCAACGAATATTGCATTTGAGGAAGTATAATGGATGTATATCTTTT
genomic: TTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgtatgtcctg ... tattattcagGCTCTGCAACGAATATTGCATTTGAGGAAGTATAATGGATGTATATCTTTT
agaagattagctgaaattagaacatcaatgttactaaactgttcttattattcagGCTCTGCAACGAATATTGCATTTGAGGAAGTATAATGGATGTATATCTTTTGTGCCTGCACCTGGCTTTGAAGCTTTTGGAGAGCCAAGTACTTACAAAG
tactaaa putative branch site (score: 1)
ctgttctt CT-rich tract
ttcttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccattttaaaacatagcttggatggtgttatagatccttgttcagaagattagctgaaattagaacatcaatgttactaaactgttcttattattcagGCTCTGCAACGAATATTGCATTTGAGGAAGTATAATGGATGTATATCTTTTGTGCCTGCACCTGGCTTTGAAGCTTTTGGAGAGCCAAGTACTTACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
acccatt
- - - - -aaaacat
- - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtt