Sequence
atgc intronic sequence ATGC exonic sequencegttttttactttgcataaacctccattcattctatcagatcatgtatgatgtgcagttttatcattcaaatggttattatttatttattttcgtgcagGAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTCAAGCACAAACCTTACATAAAGTCTAGAGATGCTGATGGGAGGCCTGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0174g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G451357_T01 (Zea mays), 3'ss of exon 5
gttttttactttgcataaacctccattcattctatcagatcatgtatga-tgtgcagttttatcattcaaat---ggttattatttatttattttcgtgcagGAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTCAAGCACAAACCTTACATAAAGTCTAGAGATGCTGATGGGAGGCCTGATG
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--atgagaatgtggggaaagtttaaggatccatgttgcatttcactcaactgagtcttttttcttttctgatctgaatctgtactttgataaaatactgcagGAGCTGTTGGCGTTCCTATTGGATGGACTCCATGAAGATTTGAATCGTGTGAAGCATAGACCTTACATAAATTCAGGGGATGCTGATGGAAGATCAGATG
upper sequence: Vv00s0174g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G27790.1 (Glycine max), 3'ss of exon 7
gttttttactttgcataaacctccattcattctatcagatcatgtatgatgtgcagttttatcattcaaatggttattatttatttattttcgtgcagGAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTCAAGCACAAACCTTACATAAAGTCTAGAGATGCTGATGGGAGGCCTGATG
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gttcacctgttgactgaaagttttaccctcttcaatttctatggtgtagtctgtggtaacat--------------ttgttttgttatcttttt-cagGAGCTTTTAGCATTTCTTCTTGATGGTCTTCATGAAGACTTGAATCGTGTAAAGCACAAACCATATATAAAATCTCGAGATGCTGATGGCCGACCTGATG
upper sequence: Vv00s0174g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G30650.1 (Glycine max), 3'ss of exon 7
gttttttactttgcataaacctccattcattctatcagatcatgtatgatgtgcagttttatcattcaaatggttattatttatttattttcgtgcagGAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTCAAGCACAAACCTTACATAAAGTCTAGAGATGCTGATGGGAGGCCTGATG
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gttcacccattgactgaaagttttaccctct---tcaatttctatgtcgtagtccgtggtaacatttgttt---taccatcttttt---------cagGAGCTTTTAGCATTTCTTCTTGATGGTCTTCATGAAGACTTGAATCGTGTAAAGCACAAACCATATATAAAATCTCGAGATGCCGATGGCCGGCCTGATG
upper sequence: Vv00s0174g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G40930.1 (Arabidopsis thaliana), 3'ss of exon 7
gttttttactttgcataaacctccattcattctatcagatcatgtatgatgtgcagttttatcattcaaatggttattatttatttattttcgtgcagGAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTCAAGCACAAACCTTACATAAAGTCTAGAGATGCTGATGGGAGGCCTGATG
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--------gtttgtgagactagccagatattttctttaacc-tg---aatttaca---ttgtagctcaaggaattcgagttt-ttcatttt---gcagGAGCTTTTAGCGTTTCTGCTGGATGGTCTTCACGAGGACCTAAATCGTGTTAAACACAAACCATATATAAATTCTCGAGACGCAGATGGGCGCCCTGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351034496|gb|FQ448172.1|FQ448172EST: TTGCTCGCTTTGCACCACAATTCAGTGGATATAATCAGCATGATTCACAG GAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTC
genomic: TTGCTCGCTTTGCACCACAATTCAGTGGATATAATCAGCATGATTCACAGgttttttact ... tttcgtgcagGAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTC
EST:
gi|351042829|gb|FQ434391.1|FQ434391EST: TTGCTCGCTTTGCACCACAATTCAGTGGATATAATCAGCATGATTCACAG GAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTC
genomic: TTGCTCGCTTTGCACCACAATTCAGTGGATATAATCAGCATGATTCACAGgttttttact ... tttcgtgcagGAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatgatgtgcagttttatcattcaaatggttattatttatttattttcgtgcagGAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTCAAGCACAAACCTTACATAAAGTCTAGAGATGCTGATGGGAGGCCTGATG
tttattttc CT-rich tract
agttttatcattcaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttttactttgcataaacctccattcattctatcagatcatgtatgatgtgcagttttatcattcaaatggttattatttatttattttcgtgcagGAGCTCTTAGCATTTTTATTGGATGGTCTTCATGAAGATCTGAATCGTGTCAAGCACAAACCTTACATAAAGTCTAGAGATGCTGATGGGAGGCCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT