Sequence
atgc intronic sequence ATGC exonic sequencegtaactattttattcatcatctttaaacaattcttttaaccttaaaagctgctatgttccttatgttcaatgatactcattccccagtgttttttacagATTGTCAATGAGTACAGTGATCTCCTCACTACCCAACTTGAGAACCAAAAATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0125g00250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G00770.2 (Glycine max), 3'ss of exon 7
----------gtaactattttattcatcatctttaaac---aattcttttaacctta-aaagctgctatgttccttatgttcaatgatactcattccccagtgttttttacagATTGTCAATGAGTACAGTGATCTCCTCACTACCCAACTTGAGAACCAAAAATTG
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gtaatgttgcaagattaatttagtaatttgctcgattcttagatttatgtatctttacggggacttttaatttctcacac---attatatgaatatac---tttcttttacagATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTA
upper sequence: Vv00s0125g00250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G00770.1 (Glycine max), 3'ss of exon 9
----------gtaactattttattcatcatctttaaac---aattcttttaacctta-aaagctgctatgttccttatgttcaatgatactcattccccagtgttttttacagATTGTCAATGAGTACAGTGATCTCCTCACTACCCAACTTGAGAACCAAAAATTG----------------------------------------------
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gtaatgttgcaagattaatttagtaatttgctcgattcttagatttatgtatctttacggggacttttaatttctcacac---attatatgaatatac---tttcttttacagATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTAGTAAGTGTACTTCATTTGTCCCTTGCTGTGAATCTGCAAAACATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagctgctatgttccttatgttcaatgatactcattccccagtgttttttacagATTGTCAATGAGTACAGTGATCTCCTCACTACCCAACTTGAGAACCAAAAATTG
tgtttttt CT-rich tract
tgtttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactattttattcatcatctttaaacaattcttttaaccttaaaagctgctatgttccttatgttcaatgatactcattccccagtgttttttacagATTGTCAATGAGTACAGTGATCTCCTCACTACCCAACTTGAGAACCAAAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC