Sequence
atgc intronic sequence ATGC exonic sequence...tgaaaactgataatttcattaaaaagaagaagataatccatgctgttatgttagcttggcttgatgtgcttattattggatggttttcttggctctgtagCTCTTGTTGACACATTGGTTGCCCAAAACTGGGGCATGGGAAGAAGATCATGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G02180.3 (Glycine max), 3'ss of exon 8
--------tgaa--aactgataatt-tcattaaaaagaagaa--gataatccatgctgtt----atgttagcttggcttgatg-tgct-tattattgga-------tggttttcttggctc---tgtagCTCTTGTTGACACATTGGTTGCCCAAAACTGGGGCATGGGAAGAAGATCATGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATG-
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gtatttgttaaatgagattacaatcaccatcagatactgttattattaattcaatctgctggcagtgtaatcaaaacaagatgatgccacattattggaataattttgtttctgttggtgaaaatgcagCTTTGGTTGATACATTGGTTGCT-AAAACTCGTGCATGGGAAGAAGATCATGGTATGTCATTTACATATGATGGCGTTCCTCTTCTTGCCATGTTAGATGA
upper sequence: Vv19s0090g01230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G46450.3 (Glycine max), 3'ss of exon 8
--------tgaa--aactgataatt-tcattaaaaa--gaagaagataatcca---tgctgttat-gttagcttggcttgatg-tgct-tattattgga-------tggttttcttggctc---tgtagCTCTTGTTGACACATTGGTTGCCCAAAACTGGGGCATGGGAAGAAGATCATGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATG-
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gtatttgttaaatgagattataatcaccatcagatactgttcttattaatttaatctgctgtcgttgtaagcaaaacaaaatgatgccacattattggaataattttgtttctgttggtgaaaatgcagCTTTGGTCGATACATTGGTTGCT-AAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTTACATATGATGGTGTTCCTCTTCTTGCCATGTTAGATGA
upper sequence: Vv19s0090g01230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G02200.1 (Glycine max), 3'ss of exon 11
--------tgaa--aactgataatt-tcattaaaaagaagaa--gataatcca---tgctgtta-tgttagcttggcttgatg-tgct-tattattgga-------tggttttcttggctc---tgtagCTCTTGTTGACACATTGGTTGCCCAAAACTGGGGCATGGGAAGAAGATCATGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATG-
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gtatttgttaaatgagattacaatcaccatcagatactgttattattaattcaatctgctgtcagtgtaagcaaaacaagatgatgccacattattggaataattttgtttctgttggtgaaaatgcagCTTTGGTTGATACATTGGTTGCT-AAAACTCGTGCATGGGAAGAAGATGATGGTATGTCATGTACATATGATGGCGTTGCTCTTCTTGCCATGTTAGATGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatgttagcttggcttgatgtgcttattattggatggttttcttggctctgtagCTCTTGTTGACACATTGGTTGCCCAAAACTGGGGCATGGGAAGAAGATCATGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATG
tttcttggc putative branch site
ttttcttg CT-rich tract
ttattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaaaactgataatttcattaaaaagaagaagataatccatgctgttatgttagcttggcttgatgtgcttattattggatggttttcttggctctgtagCTCTTGTTGACACATTGGTTGCCCAAAACTGGGGCATGGGAAGAAGATCATGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATG
- -aaactga
- - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - -aagataa
- - - - - - - - - - - - - - - - - - -ccatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgg