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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcttgtacctctgacatgtatgcatttaatatgttgcttgacttctctgttaaaccattaacaatctaaaaatttcatttggagacagAAACCAGGGGAAGGGAGGGCTTCAAAACTTGCAAAAAGG

Basic information

species Vitis vinifera
transcript Vv19s0090g00810.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G10460.1 (Glycine max), 3'ss of exon 8
---------------gttggtctt-gtacctct----gacatgtatgcatttaatatgttgcttgacttctctgttaa------accattaacaatctaaaaatttcatttggagacagAAACCAGGGGAAGGGAGGGCTTCAAAACTTGCAAAAAGG
               | ||| |||  || || |    |  ||   |   | ||| |  |    | | || | |||| |      |  | |||| || |  ||  || | ||| |||||||| || |||||||| |  |||||||||||||||||||||
gtcaaacatggcaaaggtggccttcatatctttctatgcaattcttctgtataacagttataataaattttttgttgacatatgataactaaccatttgtaatatttacttgaagACAGAAGCCTGGGGAAGGCAAAGCTTCAAAACTTGCAAAAAGG

upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G12920.1 (Glycine max), 3'ss of exon 8
gttggtcttgtacctctgacatgtatgcatttaatatgttgcttgacttctctgttaaaccattaacaatctaaaaatttcatttggagacagAAACCAGGGGAAGGGAGGGCTTCAAAACTTGCAAAAAGG
              | | |||  |||     |||  | ||  ||||| | |       |  | |||| || |  ||  || | ||| |||||||| || |||||||| |  |||||||||||||||||||||
-------------gtataacagttataa---taacttttttgttgacatat------gataactaaccatttgtaatatttacttgaagACAGAAGCCTGGGGAAGGCAAAGCTTCAAAACTTGCAAAAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttgacttctctgttaaaccattaacaatctaaaaatttcatttggagacagAAACCAGGGGAAGGGAGGGCTTCAAAACTTGCAAAAAGG
                                       tttcattt  CT-rich tract
                       attaacaatctaaaaa  TA-rich tract