Sequence
atgc intronic sequence ATGC exonic sequence...gcatgcatgctttgacaaacaagcatgtttcagaaaatagatggtgaatcctcctttatttttttcttatgaatctggattgttcttcatgcaactgcagGTTTATGCCATTCCTCATATTATCTGGACGGCTATGCCCGCCTGGTATTGAAGGGACTTTATTTGCCCTGTTCATGTCAATAAACAATCTTGGGGCCACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G42640.1 (Glycine max), 3'ss of exon 6
---gcatgcatgctttgacaaacaagcatgtttcagaaaatagatggtgaatcctcctttatttttttcttatgaatctggattgttcttcatgcaactgcagGTTTATGCCATTCCTCATATTATCTGGACGGCTATGCCCGCCTGGTATTGAAGGGACTTTATTTGCCCTGTTCATGTCAATAAACAATCTTGGGGCCACC
| | || | || || ||| || | ||| | ||| | | | ||| || | | | || | || |||| ||||||||||||||||| ||||| || |||||||||| || || || || || |||||||||||||||||||| || ||||||||||||||||| | || ||||
tctgagtttttgttgctggaagcata-atgatttgaacaattatttgtgc-tacatcattagttctaaatcgt-aaccattttttttctgggaaaaactgcagGTTTATGCCTTTCCTGATCTTATCTGGACAACTTTGTCCTCCAGGAATTGAAGGGACTTTATTTGCACTTTTCATGTCAATAAACAACTTGGGATCCACA
upper sequence: Vv19s0090g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G11640.1 (Glycine max), 3'ss of exon 6
----gcatgcatgctttgacaaacaagcatgtt-tcagaaaatagatggtgaatcctcctttatttttttcttatgaatctggattgttcttcatgcaactgcagGTTTATGCCATTCCTCATATTATCTGGACGGCTATGCCCGCCTGGTATTGAAGGGACTTTATTTGCCCTGTTCATGTCAATAAACAATCTTGGGGCCACC
|||||| ||| ||| || |||||||| |||| | ||| || | || | | | | |||| ||||||||||||||||| ||||| || || ||||| | ||||| || || || |||||||||||||||||||| || ||||||||||||||||| | || ||||
gacaacatgcaaatgatgatctttctatttgtcatcttaaaataga-attgaaaacgtttttcattccataacattatttt----ttttctgggaaaaactgcagGTTTATGCCTTTCCTGATCTTGTCTGGGCAACTATGTCCTCCAGGAATTGAAGGGACTTTATTTGCACTTTTCATGTCAATAAACAACTTGGGATCCACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatcctcctttatttttttcttatgaatctggattgttcttcatgcaactgcagGTTTATGCCATTCCTCATATTATCTGGACGGCTATGCCCGCCTGGTATTGAAGGGACTTTATTTGCCCTGTTCATGTCAATAAACAATCTTGGGGCCACC
tttatttttttcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcatgcatgctttgacaaacaagcatgtttcagaaaatagatggtgaatcctcctttatttttttcttatgaatctggattgttcttcatgcaactgcagGTTTATGCCATTCCTCATATTATCTGGACGGCTATGCCCGCCTGGTATTGAAGGGACTTTATTTGCCCTGTTCATGTCAATAAACAATCTTGGGGCCACC
gcatgca
- - - - - - -gacaaac
- - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - -agaaaat
- - - - - - - - - - - - - - - - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggattg