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gtaagtgaatctggcatttttatctcggcagcaagccttcaacaacctttattctatctgctacagtcgctctatctgatagtcatgtacatttgcagGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGCTATA
species | Vitis vinifera |
transcript | Vv19s0085g00720.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGCCAATTTTGTGCTCCCTCT GTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTGEST: gi|110708160|gb|EE085385.1|EE085385
genomic: GAAAGGCCAATTTTGTGCTCCCTCTgtaagtgaat ... acatttgcagGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTG
EST: AGACTGGAAAAATTATCAATATTAAGAAAGGCCAATTTTGTGCTCCCTCT GTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTGEST: gi|110388217|gb|EC952948.1|EC952948
genomic: AGACTGGAAAAATTATCAATATTAAGAAAGGCCAATTTTGTGCTCCCTCTgtaagtgaat ... acatttgcagGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTG
EST: AGACTGGAAAAATTATCAATATTAAGAAAGGCCAATTTTGTGCTCCCTCT GTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTGEST: gi|30252416|gb|CB969967.1|CB969967
genomic: AGACTGGAAAAATTATCAATATTAAGAAAGGCCAATTTTGTGCTCCCTCTgtaagtgaat ... acatttgcagGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTG
EST: AGACTGGAAAAATTATCAATATTAAGAAAGGCCAATTTTGTGCTCCCTCT GTCATGANAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTGEST: gi|30128204|gb|CB913543.1|CB913543
genomic: AGACTGGAAAAATTATCAATATTAAGAAAGGCCAATTTTGTGCTCCCTCTgtaagtgaat ... acatttgcagGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTG
EST: GAAAGGCCAATTTTGTGCTCCCTCT GTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTG
genomic: GAAAGGCCAATTTTGTGCTCCCTCTgtaagtgaat ... acatttgcagGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTG
aacctttattctatctgctacagtcgctctatctgatagtcatgtacatttgcagGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGCTATA
atctgat putative branch site (score: 4)
ttattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaatctggcatttttatctcggcagcaagccttcaacaacctttattctatctgctacagtcgctctatctgatagtcatgtacatttgcagGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG