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...cttattatcaacgtagtgtttgttcctagtaaaaaaagaattgtgctttcttggccagagatttctcttcatacccatatcttctaaactctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAATTAGATACATCGGAGCTTGAGGAGCTTATCCGTTCAAAAGAGGCACATT
species | Vitis vinifera |
transcript | Vv19s0027g01660.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351056299|gb|FQ454160.1|FQ454160
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351019880|gb|FQ439697.1|FQ439697
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|349829098|gb|FQ419630.1|FQ419630
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351021566|gb|FQ429670.1|FQ429670
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|349828467|gb|FQ417209.1|FQ417209
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351029259|gb|FQ436653.1|FQ436653
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351015245|gb|FQ445529.1|FQ445529
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|352786284|gb|FQ478895.1|FQ478895
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351014040|gb|FQ434192.1|FQ434192
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|349824097|gb|FQ417484.1|FQ417484
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351014258|gb|FQ434847.1|FQ434847
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351019573|gb|FQ439390.1|FQ439390
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351030963|gb|FQ438999.1|FQ438999
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351030959|gb|FQ438995.1|FQ438995
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351015056|gb|FQ444345.1|FQ444345
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351052152|gb|FQ450722.1|FQ450722
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|351036687|gb|FQ457400.1|FQ457400
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAAEST: gi|349832490|gb|FQ421051.1|FQ421051
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
EST: TCACTGAGTTAACTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAG GTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
genomic: TCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGgtaatcattg ... ctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAA
ctttcttggccagagatttctcttcatacccatatcttctaaactctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAATTAGATACATCGGAGCTTGAGGAGCTTATCCGTTCAAAAGAGGCACATT
ttctaaa putative branch site (score: 2)
ctctctactt CT-rich tract
atatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttattatcaacgtagtgtttgttcctagtaaaaaaagaattgtgctttcttggccagagatttctcttcatacccatatcttctaaactctctacttagGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAATTAGATACATCGGAGCTTGAGGAGCTTATCCGTTCAAAAGAGGCACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - -ttcttgg