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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattccccaattcagtaaatgatactgtattttattttattctccttttctgtctttgtggttaagtaatcattaccaaaattgatatccttaggaaaataaagcatgctgaaaattgaccttgttgacattcttaatgtctgatttaggttccctgaatgtttaatttaaatgctttgtatgcagTTCTCAAAGGACCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAG

Basic information

species Vitis vinifera
transcript Vv19s0027g01200.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G078756_T01 (Zea mays), 3'ss of exon 6
gtaattccccaattcagtaaatgatactgtattttattttattctccttttctgtctttgtggttaagtaatcattaccaaaattgatatccttaggaaaataaagcatgctgaaaattgaccttgttgacattcttaatgtctgatttaggttccctgaatgtttaatttaaatgctttgtatgcagTTCTCAAAGGACCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAG
                                                                       |  ||| | ||  |  |||    | || |     |||||||      || | | |||   |||     |     | ||  ||| |    |  || | |    |||||    |  ||||||||| | | | ||||||| ||||||||||||||||||||||||
-----------------------------------------------------------------------tgtttatctaacatagtattaccaagagat----gcatgct------tgtcttggtttgtatttactctcagcaactttagtttctaagacattcattc---atgct----acccagTTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG

upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AC211349.4_FGT001 (Zea mays), 3'ss of exon 6
gtaattccccaattcagtaaatgatactgtattttattttattctccttttctgtctttgtggttaagtaatcattaccaaaattgatatccttaggaaaataaagcatgctgaaaattgaccttgttgacattc-ttaatgtctgatttaggttccctgaatgtttaatttaaatgct--ttgtatgcagTTCTCAAAGGACCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAG
                                                                                            ||     || | || ||    || | |  || |||| |  ||  ||  | | |  | |  |   | | | | | |||   |   | |  || ||  ||||||||| | | | ||||||| ||||||||||||||||||||||||
-------------------------------------------------------------------------------------------gttgatccaacatagtattaacaagagttgccatgttcatcttggtttgtatttactctcagcaacattagtttctaagacattcgttcattttacccagTTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttaatgtctgatttaggttccctgaatgtttaatttaaatgctttgtatgcagTTCTCAAAGGACCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAG
                          aatgtttaatttaaat  TA-rich tract