Sequence
atgc intronic sequence ATGC exonic sequencegtacttggtgtttgcttatactagcaatggaacttgtcaattctgcatatgaacctaactcccattgcattttttaattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTTTGATATGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os02g48964.1 (Oryza sativa), 3'ss of exon 7
gtacttgg--tgtttgcttatactagcaatggaacttgtcaattctgcatatgaacctaactcccattgcattttttaattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTTTGATATGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCA
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gtaattgccttgttctgttataaagttcattagatgtgacctttttgaacttgcatctgtat----taatactgttttatccccagTGGTGCTGTTCACTTCATGGCATCGAATAATGACTCTGGTGTAAGAGACTATGATATGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCA
upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G12500.1 (Glycine max), 3'ss of exon 7
gtacttggtgtttgcttatactagcaatggaacttgtcaattc-tgcatatgaac-ctaactcccat-tg--cattttttaattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTTTGATATGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCA
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gtatatagt-tttccttctcctggtggttttgtcatttgatttatggatatcggcaccaagtttaatgtgattgttttctgatttttagTGGTGCAGTTCATTTCACAGCCGCTAATAATGATAGTGGAGTGAGAGACTTTGATATGGAGAAATTTCAGCTTTCTAAGCATTTTTGTTTTCCCTGGCCA
upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G13340.2 (Arabidopsis thaliana), 3'ss of exon 7
----gtacttggtgtttgcttatactagcaatgg-aacttgtcaattctgcatatgaacctaactcccattgcattttttaattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTTTGATATGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCA
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gtttgtgctagtcctttgcccgaaaggtccacattaagttgttagagtcac---tgcttgtaacttagttttggcttct--gtttacagTGGTGCACTTCATTTTACTGCGTCAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCATTTCCGTTTTCCTTGGCCA
upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G56190.2 (Arabidopsis thaliana), 3'ss of exon 7
---gtacttggtgtt--tgcttatactagcaatggaactt----gtcaattctgcatatgaacctaactcccattgcattttttaatttt--cagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTTTGATATGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCA
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gtatctcttcactttcatattaattttggttttggacgtccaaggttagacgataggacgaacagaaactgaaactagttatatggctttattagCGGCGCACTGCATTTCATGGCCTCAAATAATGACTGTGGAGTCAGAGACTTTGACATGGAGAGATATAAGCTTGTCCAACTCTTCCGTTATCTATGGCCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30328304|gb|CD011566.1|CD011566EST: GATTTATGCCAGTTCCAG TGGTGCAGTTCACTTCAGTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
genomic: GATTTATGCCAGTTCCAGgtacttggtg ... taattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
EST:
gi|32249634|gb|CD715453.1|CD715453EST: GATTTATGCCAGTTCCAG TGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
genomic: GATTTATGCCAGTTCCAGgtacttggtg ... taattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
EST:
gi|32270441|gb|CD719600.1|CD719600EST: GATTTATGCCAGTTCCAG TGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
genomic: GATTTATGCCAGTTCCAGgtacttggtg ... taattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaacttgtcaattctgcatatgaacctaactcccattgcattttttaattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTTTGATATGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCA
catttttt CT-rich tract
attgcattttttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttggtgtttgcttatactagcaatggaacttgtcaattctgcatatgaacctaactcccattgcattttttaattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTTTGATATGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA