1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatttgtgtgccattgagttatttgccccattaatcttaggcaaattctttcaaatgctggttgcttcttgagtgtaatattcttttaagtaatagttaactccacaattatcacatgggttttccaagattattaaaaagtcctagtagcttaatacttcaatttgattcggtcttgcagGTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGCACTGCACATCAGGCTGGAGCTTTAACTCTTTTGTCGCTCATGGTCCTCC
species | Vitis vinifera |
transcript | Vv19s0015g01340.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGTACGTTTTTTAATTGGAAACACCATTGGCATGGCTGCTCTTCAG GTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGCEST: gi|32245891|gb|CD711710.1|CD711710
genomic: CAGCAGTACGATTTTTAATTGGAAACACCATTGGCATGGCTGCTCTTCAGgtatttgtgt ... ggtcttgcagGTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGC
EST: CAGCAGTACGTTTTTTAATTGGAAACACCATTGGCATGGCTGCTCTTCAG GTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGCEST: gi|110412877|gb|EC978640.1|EC978640
genomic: CAGCAGTACGATTTTTAATTGGAAACACCATTGGCATGGCTGCTCTTCAGgtatttgtgt ... ggtcttgcagGTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGC
EST: CAGCAGTACGATTTTTAATTGGAAACACCATTGGCATGGCTGCTCTTCAG GTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGCEST: gi|27582559|gb|CB005254.1|CB005254
genomic: CAGCAGTACGATTTTTAATTGGAAACACCATTGGCATGGCTGCTCTTCAGgtatttgtgt ... ggtcttgcagGTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGC
EST: CAGCAGTACGTTTTTTAATTGGAAACACCATTGGCATGGCTGCTCTTCAG GTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGC
genomic: CAGCAGTACGATTTTTAATTGGAAACACCATTGGCATGGCTGCTCTTCAGgtatttgtgt ... ggtcttgcagGTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGC
aagattattaaaaagtcctagtagcttaatacttcaatttgattcggtcttgcagGTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGCACTGCACATCAGGCTGGAGCTTTAACTCTTTTGTCGCTCATGGTCCTCC
ttaatacttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtgtgccattgagttatttgccccattaatcttaggcaaattctttcaaatgctggttgcttcttgagtgtaatattcttttaagtaatagttaactccacaattatcacatgggttttccaagattattaaaaagtcctagtagcttaatacttcaatttgattcggtcttgcagGTCACTTTAGGGATATCAACTCTCCTATCATATGTACCTGTTTCACTCGGCACTGCACATCAGGCTGGAGCTTTAACTCTTTTGTCGCTCATGGTCCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT