Sequence
atgc intronic sequence ATGC exonic sequencegtgccttctcttttcatgttatttcttttactgttgtatttgtttttaattgttcaccatctctactaaaaataataattattattattgtcacatgcatttacagACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G48060.2 (Glycine max), 3'ss of exon 2
gtgccttctcttttcatgttatttcttttactgttgtatttgtttttaattgttcaccatctctactaaaaataataattattattattgtcacatgcatttacagACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGA
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--------------------------gtttttgtcccatcctttcccaaattaacgtcttttcatccattctatataaagcttgatagtgt-----atatttgcagACATTACATCACATGTATGTTGTCAATGCTGGTTCTGGCTTTAAGAAGATGCTTTGGCCTGCTGCACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGA
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G12450.1 (Glycine max), 3'ss of exon 6
gtgccttctcttttcatgttatttcttttactgttgtatttgtttttaattgttcaccatctctactaaaaataataattattattattgtcacatgcatttacagACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGA
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---------------------gtttttgtcccatcctttcccaaattaacatcttttcatccctcttccattctatataaaacttgatagt---gtatatttgcagACATTACATCAAATGTATATTGTCAATGCTGGTTCTGGCTTTAAGAAGATGCTTTGGCCTGCCACACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGA
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G17830.1 (Glycine max), 3'ss of exon 5
gtgccttctcttttcatgttatttcttttactgttgta-tttgtttttaattgttcaccatctctactaaaaataataattattattattgtcacatgcatttacagACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGA
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---------gtttttatact--tccttttcccaaaataacttgttttccagt------catctac-ctatgaata-taaacatcacta-----acatatatttgcagACTTTACATCGAATGTATATCATCAATGCTGGTCCTGGATTTAAGAGGATGCTTTGGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGA
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G55690.3 (Arabidopsis thaliana), 3'ss of exon 7
gtgccttctcttttcatgttatttcttttactgttgtatttgtttttaattgttcaccatctctactaaaaataataattattattattgtcacatgcatttacagACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGA
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------------------gtacttgactttct-caattttacatctcatatgttcttcacatgcattcccagttgt-----ttgaagtcatcatattattttgcagACGTTGCACAGAATGTACATTGTAAATGCTGGAACAGGTTTCAAAAAGATGCTTTGGCCTGCTGCTCAGAAGTTTCTTGATGCAAAGACCATTGCAAAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110690338|gb|EE067360.1|EE067360EST: CAAATCTTGTGGCTGCCATGGCTAAGATAGACAATAATTACTACCCTGAG ACACTACATCGAATGTTTGTTGTCAATGCTGGTCCTGGTTTCAAGAAGATG
genomic: CAAATCTTGTGGCTGCCATGGCTAAGATAGACAATAATTACTACCCTGAGgtgccttctc ... gcatttacagACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttcaccatctctactaaaaataataattattattattgtcacatgcatttacagACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGA
tactaaa putative branch site (score: 1)
taaaaataataattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgccttctcttttcatgttatttcttttactgttgtatttgtttttaattgttcaccatctctactaaaaataataattattattattgtcacatgcatttacagACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC