1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcattccatgctgcttatatttgttacctactacttcatgtaatatttgcaattttccattgttcgatatttactggtattattcttgtttttctttcagGTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGTGTTGTATTG
species | Vitis vinifera |
transcript | Vv19s0015g00760.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGTCATTGCTGTTGGTGTTGGGCAGAGCACATTTGACAAGGCATCT GTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGTEST: gi|110361721|gb|EC925215.1|EC925215
genomic: TTCCTGTCATTGCTGTTGGTGTTGGGCAGAGCACATTTGACAAGGCATCTgtgaggacac ... tttctttcagGTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGT
EST: GTTGGGCAGAGCACATTTGACAAGGCATCT GTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGTEST: gi|34550018|gb|CF518250.1|CF518250
genomic: GTTGGGCAGAGCACATTTGACAAGGCATCTgtgaggacac ... tttctttcagGTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGT
EST: GTTGGTGTTGGGCAGAGCACATTTGACAAGGCATCT GTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGT
genomic: GTTGGTGTTGGGCAGAGCACATTTGACAAGGCATCTgtgaggacac ... tttctttcagGTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGT
tttgcaattttccattgttcgatatttactggtattattcttgtttttctttcagGTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGTGTTGTATTG
tattattcttgttttt CT-rich tract
tattattcttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattccatgctgcttatatttgttacctactacttcatgtaatatttgcaattttccattgttcgatatttactggtattattcttgtttttctttcagGTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGTGTTGTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - -ccatgct
- - - - - - - - - - -tgttacc
- - - - - - - - - - - - - - - - - -tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttactgg