Sequence
atgc intronic sequence ATGC exonic sequencegtgatgtgttcgttgcataaaggacctgtagttgggaggtaattttatgtgtgtttgcaaatctattttctgttttactgaggtgtttgtaatttttcagGCTTCATCAGCTTACTGGAGAGGAAATAGAGATCGTGAAAGTTTGCAAAGAGTTTATGGGATATCGTATCCTGATTCAAAACGATTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g00470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 5
-----gtgatgtgttcgttgcata-aaggacctgtagttgggaggtaattttatgtgtgt---ttgcaaat-ctattttctgttttactgaggtgtttgtaatttttcagGCTTCATCAGCTTACTGGAGAGGAAATAGAGATCGTGAAAGTTTGCAAAGAGTTTATGGGATATCGTATCCTGATTCAAAACGATTGAAG
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gtatgcttaaactatcttatcatgcaaccatttctacttttgatttatccattaacatatcaatgacaagtactttggtttaattggttatcgtgtttggaattt--cagGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAAAGTCTGAAG
upper sequence: Vv19s0015g00470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G03750.1 (Glycine max), 3'ss of exon 5
------gtgatgtgttcgttgcataaaggacctgtagttgggaggtaat--tttatgtgtgtttgcaaatctattttctgttttactga--ggtgtttgtaatttttcagGCTTCATCAGCTTACTGGAGAGGAAATAGAGATCGTGAAAGTTTGCAAAGAGTTTATGGGATATCGTATCCTGATTCAAAACGATTGAAG
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gtacgtataaactattttatcagtctaccatttctagttttgatttatccattaacttatgtcaatggcaagtactttggtttcattggttattgtatttggaattccagGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAAAGTCTAAAG
upper sequence: Vv19s0015g00470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G26830.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgatgtgttcgttgcataaaggacctgtagttgggaggtaattttatgtgtgtttgcaaatctattttctgttttactgaggtgtttgtaatttttcagGCTTCATCAGCTTACTGGAGAGGAAATAGAGATCGTGAAAGTTTGCAAAGAGTTTATGGGATATCGTATCCTGATTCAAAACGATTGAAG
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-------gtgatttgc-tactgtatctctag----gagctacatctctacagatt--ctagtttgttttct--tatgctgaccaatatatt-tttctcagGCCTCATCAGCTTACTGGAAGGGTGACAAAGACCGTGAGAGCTTGCAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGCAGCTGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgtgtgtttgcaaatctattttctgttttactgaggtgtttgtaatttttcagGCTTCATCAGCTTACTGGAGAGGAAATAGAGATCGTGAAAGTTTGCAAAGAGTTTATGGGATATCGTATCCTGATTCAAAACGATTGAAG
tttttc CT-rich tract
tattttctgtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatgtgttcgttgcataaaggacctgtagttgggaggtaattttatgtgtgtttgcaaatctattttctgttttactgaggtgtttgtaatttttcagGCTTCATCAGCTTACTGGAGAGGAAATAGAGATCGTGAAAGTTTGCAAAGAGTTTATGGGATATCGTATCCTGATTCAAAACGATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG