Sequence
atgc intronic sequence ATGC exonic sequence...aattctaaaatttcttggccaccctgaagaacatctttaatagttgtatttttcttgagcattggctcttattctatgttcccatttaaactttcatcagGTATCTTCTCAAGAATGATGGGCTATTTGTCGGGAGTTCTTCAGCCATGAACTGCGTTGGAGCTGTCAGAGTGGCACAGTCGATCGGCCCTGGTCACACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os03g11660.1 (Oryza sativa), 3'ss of exon 5
aattctaaa-atttcttggccaccctgaagaacatcttta--atagttgta--tttttcttgagcattggctcttattctatgttcccatttaaactttcatcagGTATCTTCTCAAGAATGATGGGCTATTTGTCGGGAGTTCTTCAGCCATGAACTGCGTTGGAGCTGTCAGAGTGGCACAGTCGATCGGCCCTGGTCACACA
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gctcatagttgtttattctcttatcttaagataattcaaagaaaagctaaaaatgtatttcaattatctaacctcaatctacttgtaaatattaactt-----agGTTCTTGTTGAAAAATGATGGGCTGTTCGTTGGGAGTTCTTCAGCCATGAATTGTGTTGGTGCTGTAAGAGTTGCTCAAGATTTAGGTCCAGGACATACA
upper sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 3
aattctaaaatttcttggccaccctgaagaacatctttaatagttgtatttttcttgagcattggctcttattctatgttcccattt------aaactttcatcagGTATCTTCTCAAGAATGATGGGCTATTTGTCGGGAGTTCTTCAGCCATGAACTGCGTTGGAGCTGTCAGAGTGGCACAGTCGATCGGCCCTGGTCACACA
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----ggaaaattgtatagttagcagatagttagtacttcatc-ttacaaaattct-aagcgaaaatccagattaactgacctcattttatttgaaacataacttagGTTCTTGCTGAAAAACGATGGACTATTTGTTGGCAGTTCTTCAGCCATGAATTGCGTTGGCGCTGTAAGAGTTGCTCAAGATTTGGGTCCAGGGCATACA
upper sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G46950.1 (Glycine max), 3'ss of exon 9
---------------------------------------aattctaaaatttcttggccaccctgaagaacatctttaatagttgtatttttcttgagcattggctcttattctatgttcccatttaaacttt---catcagGTATCTTCTCAAGAATGATGGGCTATTTGTCGGGAGTTCTTCAGCCATGAACTGCGTTGGAGCTGTCAGAGTGGCACAGTCGATCGGCCCTGGTCACACA
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gttgttacttactcttttgtaaaccatcctacttttcttatttttagcgattttttgttcttttgtgtcaaacttgaagaaatgatgaaatgaagtgataccagactgaatgtttcaccaactgttgtttttgatgtatcagGTTTCTTTTGAAGAACGATGGTCTCTTCCTTGGGAGTTCTTCTGCAATGAACTGTGTTGGAGCAGTAAGAGTAGCGCAAGCAATTGGCCCTGGTCACACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatttttcttgagcattggctcttattctatgttcccatttaaactttcatcagGTATCTTCTCAAGAATGATGGGCTATTTGTCGGGAGTTCTTCAGCCATGAACTGCGTTGGAGCTGTCAGAGTGGCACAGTCGATCGGCCCTGGTCACACA
ctttcatc CT-rich tract
atttaaactttcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattctaaaatttcttggccaccctgaagaacatctttaatagttgtatttttcttgagcattggctcttattctatgttcccatttaaactttcatcagGTATCTTCTCAAGAATGATGGGCTATTTGTCGGGAGTTCTTCAGCCATGAACTGCGTTGGAGCTGTCAGAGTGGCACAGTCGATCGGCCCTGGTCACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - -ttcttgg
- - - - - - - - - ccaccct
- - - - - - - - - - - - -gaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttccc