Sequence
atgc intronic sequence ATGC exonic sequencegtcagttggagtatcttcctatcattttactgtaaaatgggagcttctttatggatacttctgttgcagttcgttttcaatgtttaatatattgagcctttaagcccatttttagtgtttcatgaggtgatcatcgaaattttatcttccagTGGCGAAATTGGTGCTGGAAAAACTGAGACAGCAAAAATTGCAATGCAATACCTGGCTGCACTTGGTGGAGGCAGCGATGGGATAGAGAATGAACTCACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G35790.1 (Glycine max), 3'ss of exon 7
gtcagttggagtatcttcctatcattttactgtaaaatgggagcttctttatggatacttctgttgcagttcgttttcaatgtttaatatattgagcctttaagcccatttttagtgtttcatgaggtgatcatcgaaattttatcttccagTGGCGAAATTGGTGCTGGAAAAACTGAGACAGCAAAAATTGCAATGCAATACCTGGCTGCACTTGGTGGAGGCAGCGATGGGATAGAGAATGAACTCACT
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gtcagc--actcagcacattagaagatt--tgtttcatgcatgcctcttaaattatgttcctg----aactcaattttttttttttg-gtaataagggtatagtcacaagtacacttgttaataa--tcgctgttagaatttt-ttgtacagTGGTGAGAGTGGATCTGGGAAAACAGAGACAGCAAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCTGTTCTGGAATAGAAAATGAAGTTCTT
upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G34780.1 (Glycine max), 3'ss of exon 8
gtcagttggagtatcttcctatcattttactgtaaaatgggagcttctttatggatacttctgttgcagttcgttttcaatgtttaatatattgagcctttaagcccatttttagtgtttcatgaggtgatcatcgaaattttatcttccagTGGCGAAATTGGTGCTGGAAAAACTGAGACAGCAAAAATTGCAATGCAATACCTGGCTGCACTTGGTGGAGGCAGCGATGGGATAGAGAATGAACTCACT
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-------------------------------------------------------------------------------------------------------------gtatacttgttaataa--tcgctgttagaatttt-ttttacagTGGTGAGAGTGGATCTGGGAAAACAGAGACAGCAAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCTGTTCTGGAATAGAAAATGAAGTTCTC
upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G27370.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcagttggagtatcttcctatcattttactgtaaaatgggagcttctttatggatacttctgttgcagttcgttttcaatgtttaatatattgagcctttaagcccatttttagtgtttcatgaggtgatcatcgaaattttatcttccagTGGCGAAATTGGTGCTGGAAAAACTGAGACAGCAAAAATTGCAATGCAATACCTGGCTGCACTTGGTGGAGGCAGCGATGGGATAGAGAATGAACTCACT
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-------------------------------gtacgatgct--ttctattctgaatgctttttgtgcactgataatttgactatgcatatgtgaagg--tgacttctgatattcatatcat-caatcaaatgaataaaatattatttcttagTGGAGAAAGTGGAGCTGGGAAAACTGAGACAGCAAAATATGCAATGCAGTACTTGGAAGCTCTTGGTGGAGGTAGCTTTGGGGTGGAAAATGAAATCCTA
upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ05534 (Selaginella moellendorffii), 3'ss of exon 4
gtcagttggagtatcttcctatcattttactgtaaaatgggagcttctttatggatacttctgttgcagttcgttttcaatgtttaatatattgagcctttaagcccatttttagtgtttcatgaggtgatcatcgaaattttatcttccagTGGCGAAATTGGTGCTGGAAAAACTGAGACAGCAAAAATTGCAATGCAATACCTGGCTGCACTTGGTGGAGGCAGCGATGGGATAGAGAATGAACTCACT---
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-------------------------------------------------------------------------------------------gtgaggagttgcctggaatttatgtgatgcactgtttcaatgctga-----tacttttcagTGGCGAGAGTGGTGCTGGAAAGACGGAAACAGCAAAAATAGCTATGCAGTACATCGCTACATTTGGTGGAGGACGTGGCG---TAGAGGATGAAATCCTTGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttaagcccatttttagtgtttcatgaggtgatcatcgaaattttatcttccagTGGCGAAATTGGTGCTGGAAAAACTGAGACAGCAAAAATTGCAATGCAATACCTGGCTGCACTTGGTGGAGGCAGCGATGGGATAGAGAATGAACTCACT
ttttatcttcc CT-rich tract
aaattttatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagttggagtatcttcctatcattttactgtaaaatgggagcttctttatggatacttctgttgcagttcgttttcaatgtttaatatattgagcctttaagcccatttttagtgtttcatgaggtgatcatcgaaattttatcttccagTGGCGAAATTGGTGCTGGAAAAACTGAGACAGCAAAAATTGCAATGCAATACCTGGCTGCACTTGGTGGAGGCAGCGATGGGATAGAGAATGAACTCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG