1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctttcaatctctcattgctttttgttgttaaatctttttttttttttttctttttggtttctttttcacctttatggtggtgaaaatggtcatcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTCATCCAGAAGAAGTTGCTTCTGGTTTTCCAATAGACCCTCCTAGGCCGT
species | Vitis vinifera |
transcript | Vv19s0014g02670.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTEST: gi|351032346|gb|FQ461599.1|FQ461599
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: GAGCGGTTCCGGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTEST: gi|351045262|gb|FQ451710.1|FQ451710
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTEST: gi|349827500|gb|FQ422368.1|FQ422368
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTEST: gi|351029582|gb|FQ427422.1|FQ427422
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTEST: gi|71876759|gb|DT025814.1|DT025814
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
ttttctttttggtttctttttcacctttatggtggtgaaaatggtcatcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTCATCCAGAAGAAGTTGCTTCTGGTTTTCCAATAGACCCTCCTAGGCCGT
tcatctt CT-rich tract
tttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttcaatctctcattgctttttgttgttaaatctttttttttttttttctttttggtttctttttcacctttatggtggtgaaaatggtcatcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTCATCCAGAAGAAGTTGCTTCTGGTTTTCCAATAGACCCTCCTAGGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - caatctc
- - - - - - cattgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatgg