Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtcatcaaatggaccctttgttaactcaagtatctttgcttgaaatagtgtcttttgatttgctgtttttaataatttctctaattagagcttttctttcttcttgtaaactattttggtggaatgacaacattgatattataaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG

Basic information

species Vitis vinifera
transcript Vv19s0014g02310.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G36130.2 (Glycine max), 3'ss of exon 5
gtattgtcatcaaatggaccctttgttaactcaagtatctttgctt-gaaatagtgtcttttgatttgctgtttttaataatttctctaattagagcttttctttcttcttgtaaactatt-ttggtggaatgacaacattgatattataaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
    | ||| ||    |||  | | |  | |    |  || ||||| |||| ||   ||||     |    |  |||  ||||| | |||| |  |  ||   || ||  |     ||||  ||  | ||||  ||| ||  ||        |||||||| ||||||||||| |||||||| ||||| ||||| |||
---gtatcaacagt--gacattctctccattgtttttcctgtgctttgaaacag---ctttccccctctcataattagaaattt-tataatcatggacttcaattttttattagctctatcattcatagaatttcaatatcaat--------tttgcagCTGCAAACATTTTATTGACTGATAATGGTGATGTAAAG

upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 3'ss of exon 6
gtattgtcatcaaatggaccctttgttaactcaagtatctttgcttgaaatagtgtcttttgatttgctgtttttaataatttctctaattagagcttttctttcttcttgtaaactattttggtggaatgacaacattgatattataaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
                                                               ||||      || |||       |  ||     || |     |   | | ||||  || |     |  |  || ||  |  | |   |||||||| || || ||||||||||  ||||||||||||||||||
--------------------------------------------------------------gtttgtgtgcattgatagaagtattgttttttatttgttgaaatgtgttttaactgcttggtacagaaaatcactttcttcctct---tttgcagCTGCGAATATTTTGTTGAGCGAGAATGGCGATGTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352772708|gb|FQ473746.1|FQ473746
EST:     TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAG                         CGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
genomic: TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAGgtattgtcat ... aaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
EST: gi|71861562|gb|DT010617.1|DT010617
EST:     CATAATGAAGGAAAAATTCACAGAGATATCAAAG                         CGGCAAACATTTTGTTGACTGAGAATGGTGATGTTAAG
genomic: CATAATGAAGGAAAAATTCACAGAGATATCAAAGgtattgtcat ... aaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
EST: gi|352768969|gb|FQ468160.1|FQ468160
EST:     TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAG                         CGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
genomic: TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAGgtattgtcat ... aaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
EST: gi|352781734|gb|FQ469032.1|FQ469032
EST:     TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAG                         CGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
genomic: TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAGgtattgtcat ... aaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
EST: gi|352781360|gb|FQ468204.1|FQ468204
EST:     TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAG                         CGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
genomic: TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAGgtattgtcat ... aaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
EST: gi|352769491|gb|FQ468419.1|FQ468419
EST:     TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAG                         CGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAGGTTGCA
genomic: TGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAGgtattgtcat ... aaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAGGTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcttgtaaactattttggtggaatgacaacattgatattataaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
                                 cattgat  putative branch site (score: 4)
                             acaacattgatattat  TA-rich tract