1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaattattgaggaatgttttgaatcataaatttggttggttaatattttattcatagggtgggaattttagcttcaatcattgaatttttcttcatgcagAGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCGAAGTGAGGGACAAACTGTATCAAACACGTGAACGTTCTCGTCATTTACT
species | Vitis vinifera |
transcript | Vv19s0014g01390.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAG AGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCGEST: gi|351018719|gb|FQ425621.1|FQ425621
genomic: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAGgtaatttgtt ... cttcatgcagAGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCG
EST: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAG AGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCGEST: gi|351032488|gb|FQ458853.1|FQ458853
genomic: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAGgtaatttgtt ... cttcatgcagAGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCG
EST: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAG AGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCGEST: gi|110699775|gb|EE077068.1|EE077068
genomic: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAGgtaatttgtt ... cttcatgcagAGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCG
EST: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAG AGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCGEST: gi|349832680|gb|FQ422038.1|FQ422038
genomic: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAGgtaatttgtt ... cttcatgcagAGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCG
EST: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAG AGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCG
genomic: TGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAGgtaatttgtt ... cttcatgcagAGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCG
ttttattcatagggtgggaattttagcttcaatcattgaatttttcttcatgcagAGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCGAAGTGAGGGACAAACTGTATCAAACACGTGAACGTTCTCGTCATTTACT
tttttcttcat CT-rich tract
aatcattgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattattgaggaatgttttgaatcataaatttggttggttaatattttattcatagggtgggaattttagcttcaatcattgaatttttcttcatgcagAGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCGAAGTGAGGGACAAACTGTATCAAACACGTGAACGTTCTCGTCATTTACT
- - - - - ggaatgt
- - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaatca