1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acatcaaaaaatgaaaaactaaagataaaacaaaacgatggaaaggcaaaattaaaacaaaacatctatttatattctttattggttccttgtattgcagGATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCTGAGGAGAAGCGAAATATTCTTCAAGCAGCAGCAGAGTGAAAAAAGTGTTATATTG
species | Vitis vinifera |
transcript | Vv18s0072g01020.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAG GATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCCGAGGAGEST: gi|26262106|gb|CA813169.1|CA813169
genomic: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAGgtgaagaatt ... tgtattgcagGATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCTGAGGAG
EST: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAG GATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCTGAGGAGEST: gi|32248777|gb|CD714596.1|CD714596
genomic: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAGgtgaagaatt ... tgtattgcagGATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCTGAGGAG
EST: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAG GATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCCGAGGAGEST: gi|18458392|gb|BM436670.1|BM436670
genomic: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAGgtgaagaatt ... tgtattgcagGATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCTGAGGAG
EST: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAG GATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCCGAGGAGEST: gi|30321011|gb|CD004273.1|CD004273
genomic: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAGgtgaagaatt ... tgtattgcagGATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCTGAGGAG
EST: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAG GATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCCGAGGAG
genomic: AGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAGgtgaagaatt ... tgtattgcagGATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCTGAGGAG
gcaaaattaaaacaaaacatctatttatattctttattggttccttgtattgcagGATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCTGAGGAGAAGCGAAATATTCTTCAAGCAGCAGCAGAGTGAAAAAAGTGTTATATTG
ttccttgt CT-rich tract
attaaaacaaaacatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatcaaaaaatgaaaaactaaagataaaacaaaacgatggaaaggcaaaattaaaacaaaacatctatttatattctttattggttccttgtattgcagGATTGTGAGAGAAGAGCCATAGCTAAGTTGTTCCGTCACAGGTCTGAGGAGAAGCGAAATATTCTTCAAGCAGCAGCAGAGTGAAAAAAGTGTTATATTG
- - -aaaaaat
- - - - - - - -aaactaa
- - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - gatggaaa
- - - - - - - - - - - - - - - - - - - - - - ggcaaaa