1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctcctttttaggaagaaaggaacattttcggggttttttattttttacttttgttttgttggatccatttttttatactatattttcttatttctttagGGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATG
species | Vitis vinifera |
transcript | Vv18s0072g00880.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTG GGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCEST: gi|110362082|gb|EC925589.1|EC925589
genomic: AACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTGgtaaggtgtc ... atttctttagGGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGC
EST: AACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTG GGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCEST: gi|110361980|gb|EC925486.1|EC925486
genomic: AACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTGgtaaggtgtc ... atttctttagGGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGC
EST: AACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTG GGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCEST: gi|110384268|gb|EC948694.1|EC948694
genomic: AACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTGgtaaggtgtc ... atttctttagGGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGC
EST: AACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTG GGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGC
genomic: AACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTGgtaaggtgtc ... atttctttagGGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGC
ttacttttgttttgttggatccatttttttatactatattttcttatttctttagGGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATG
tattttcttatttctt CT-rich tract
atccatttttttatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcctttttaggaagaaaggaacattttcggggttttttattttttacttttgttttgttggatccatttttttatactatattttcttatttctttagGGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATG
- - - - - -ggaagaa
- - - - - - - - - aggaaca
- - - - - - - - - - - - - - - ggggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatcca