Sequence
atgc intronic sequence ATGC exonic sequencegtatttggggtgctctctctccctctctctctcttgtttggttgtatgcatggtactgttttcttagctatgcgtcttaaaccttgttctcagGTATGAAAAAGAAGGGAAGCCATCTGAATTAGCTGATATAGACATATTCGTAAGTACAGTTGATCCCATGAAAGAACCTCCACTTATCACAGCAAACACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G36790.1 (Glycine max), 3'ss of exon 6
gtatttggggtgctctctctccctctctctctcttgtttggttgtatgcatggtactgttttcttagctatgcgtcttaaaccttgttctcagGTATGAAAAAGAAGGGAAGCCATCTGAATTAGCTGATATAGACATATTCGTAAGTACAGTTGATCCCATGAAAGAACCTCCACTTATCACAGCAAACACA
| | | ||| ||| | | |||| | | || | || ||||| | | || || ||||||||| |||||||| ||||||||||||||||||||||||||| | || || |||||||| ||||| |||||||||||||||||||| || ||||| |||
----------------gtatgcatctttctgtgtgccttggagtttttttacttaattattcaacagctaattctttgcaaaaac-ttaacagGTATGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATATAGACGTTTTTGTTAGTACAGTAGATCCTATGAAAGAACCTCCACTTATAACTGCAAATACA
upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G28080.1 (Glycine max), 3'ss of exon 5
gtatttggggtgctctctctccctct-ctctctcttgtttggttgtatgcatggtactgttttcttagctatgcgtcttaaaccttgttctcagGTATGAAAAAGAAGGGAAGCCATCTGAATTAGCTGATATAGACATATTCGTAAGTACAGTTGATCCCATGAAAGAACCTCCACTTATCACAGCAAACACA
|| | ||| |||| | ||| | || ||| || || || || || ||| | || | ||||||||| |||||||| ||||||||| | ||| ||||||||||| | ||||| |||||||| || || ||||| ||||||||||| || || |||||||||
---------gtatttgatctttctctgcgtatccttatatgtgtgtgtgggacataaaacattattcatta-atactttacaattt---cacagGTATGAGAAAGAAGGAAAGCCATCTCAGTTATCTGATATAGACGTGTTCGTTAGTACAGTGGACCCTATGAAGGAACCTCCACTCATTACTGCAAACACA
upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G08920.1 (Glycine max), 3'ss of exon 6
gtatttggggtgctctctctccctctctctctcttgtttggttgtatgcatggtactgttttcttagctatgcgtcttaaaccttgttctcagGTATGAAAAAGAAGGGAAGCCATCTGAATTAGCTGATATAGACATATTCGTAAGTACAGTTGATCCCATGAAAGAACCTCCACTTATCACAGCAAACACA
|| | ||| |||| || || | | | ||| || || | || || || | ||| | || | ||| |||||||||||||| ||||||||| ||||||||||||||| | ||||| |||||||| || || ||||| ||||||||||| || || |||||||||
---------gtatttgatctttctctgactatcct-tatatgtgtttgtgacataaggcattattcatta-atgctttacaattt---cacagATATGAAAAAGAAGGAAAGCCATCTCTGTTAGCTGATATAGACGTGTTCGTTAGTACAGTGGACCCTATGAAGGAACCTCCACTCATTACTGCAAACACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggttgtatgcatggtactgttttcttagctatgcgtcttaaaccttgttctcagGTATGAAAAAGAAGGGAAGCCATCTGAATTAGCTGATATAGACATATTCGTAAGTACAGTTGATCCCATGAAAGAACCTCCACTTATCACAGCAAACACA
ccttgttctc CT-rich tract
ttttctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttggggtgctctctctccctctctctctcttgtttggttgtatgcatggtactgttttcttagctatgcgtcttaaaccttgttctcagGTATGAAAAAGAAGGGAAGCCATCTGAATTAGCTGATATAGACATATTCGTAAGTACAGTTGATCCCATGAAAGAACCTCCACTTATCACAGCAAACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC