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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaatgcatcattgttgtttactataattttttattttttgataggtatcattgttgtttactacaatctcattgcttgacatttttataacttaacacttgtggaatcagAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTAGAGGTAGAG

Basic information

species Vitis vinifera
transcript Vv18s0072g00330.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71875822|gb|DT024877.1|DT024877
EST:     AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAG                         AGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
genomic: AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAGgtaaaaaaat ... gtggaatcagAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
EST: gi|349832332|gb|FQ420893.1|FQ420893
EST:     AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAG                         AGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
genomic: AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAGgtaaaaaaat ... gtggaatcagAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
EST: gi|110379018|gb|EC944186.1|EC944186
EST:     AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAG                         AGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
genomic: AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAGgtaaaaaaat ... gtggaatcagAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
EST: gi|71867579|gb|DT016634.1|DT016634
EST:     AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAG                         AGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
genomic: AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAGgtaaaaaaat ... gtggaatcagAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
EST: gi|110374060|gb|EC938564.1|EC938564
EST:     AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAG                         AGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
genomic: AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAGgtaaaaaaat ... gtggaatcagAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
EST: gi|349811194|gb|FQ406182.1|FQ406182
EST:     AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAG                         AGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAATGGCCGAGGAAGGGGTA
genomic: AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAGgtaaaaaaat ... gtggaatcagAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
EST: gi|349826958|gb|FQ419049.1|FQ419049
EST:     AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAG                         AGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA
genomic: AATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAGgtaaaaaaat ... gtggaatcagAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttactacaatctcattgcttgacatttttataacttaacacttgtggaatcagAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTAGAGGTAGAG
                       acatttttataactta  TA-rich tract